Cluster: HRGMv2_2896_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2896
- CGC Family ID: CGCFAM_01872
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2896_6 | HRGMv2_2896_6_42 | 45749 | 46690 | - | GT2 |
| pfam | HRGMv2_2896_6 | HRGMv2_2896_6_43 | 46687 | 48168 | - | O-antigen_lig |
| CAZyme | HRGMv2_2896_6 | HRGMv2_2896_6_44 | 48171 | 49307 | - | GT4 |
| TC | HRGMv2_2896_6 | HRGMv2_2896_6_45 | 49325 | 50791 | - | 2.A.66.2.22 |
Gene ID: HRGMv2_2896_6_42
Type: CAZyme
Location: 45749 - 46690 (-)
Type: CAZyme
Location: 45749 - 46690 (-)
Gene ID: HRGMv2_2896_6_43
Type: pfam
Location: 46687 - 48168 (-)
Type: pfam
Location: 46687 - 48168 (-)
Gene ID: HRGMv2_2896_6_44
Type: CAZyme
Location: 48171 - 49307 (-)
Type: CAZyme
Location: 48171 - 49307 (-)
Gene ID: HRGMv2_2896_6_45
Type: TC
Location: 49325 - 50791 (-)
Type: TC
Location: 49325 - 50791 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp900549645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2896_6_42 | vegetarian > omnivore | 3.43655 | 0.00454 |
| HRGMv2_2896_6_43 | vegetarian > omnivore | 3.66316 | 0.00454 |
| HRGMv2_2896_6_43 | vegetarian > vegan | 1.46995 | 0.00701 |
| HRGMv2_2896_6_44 | vegetarian > omnivore | 2.28584 | 0.00454 |
| HRGMv2_2896_6_44 | vegetarian > vegan | 1.33676 | 0.00701 |
| HRGMv2_2896_6_45 | vegetarian > omnivore | 2.02101 | 0.00454 |