Cluster: HRGMv2_2896_CGC1
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2896
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2896_1 | HRGMv2_2896_1_33 | 32568 | 34364 | + | GT39 |
| pfam | HRGMv2_2896_1 | HRGMv2_2896_1_34 | 34415 | 35332 | - | MTS | PrmA |
| TC | HRGMv2_2896_1 | HRGMv2_2896_1_35 | 36004 | 37755 | + | 2.A.58.2.2 |
Gene ID: HRGMv2_2896_1_33
Type: CAZyme
Location: 32568 - 34364 (+)
Type: CAZyme
Location: 32568 - 34364 (+)
Gene ID: HRGMv2_2896_1_34
Type: pfam
Location: 34415 - 35332 (-)
Type: pfam
Location: 34415 - 35332 (-)
Gene ID: HRGMv2_2896_1_35
Type: TC
Location: 36004 - 37755 (+)
Type: TC
Location: 36004 - 37755 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Limivicinus
Species
Limivicinus sp900549645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2896_1_33 | vegetarian > omnivore | 1.37242 | 0.00454 |
| HRGMv2_2896_1_34 | vegetarian > omnivore | 1.01377 | 0.00454 |
| HRGMv2_2896_1_35 | vegetarian > vegan | 1.04424 | 0.00701 |