Cluster: HRGMv2_2881_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2881
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2881_17 | HRGMv2_2881_17_9 | 7115 | 8050 | - | 8.A.5.1.4 |
| TC | HRGMv2_2881_17 | HRGMv2_2881_17_10 | 8054 | 8752 | - | 9.B.18.1.3 |
| pfam | HRGMv2_2881_17 | HRGMv2_2881_17_11 | 9117 | 10001 | + | Cytidylate_kin2 | AAA_17 | AAA_18 |
| CAZyme | HRGMv2_2881_17 | HRGMv2_2881_17_12 | 10060 | 11949 | - | GH146 |
| TC | HRGMv2_2881_17 | HRGMv2_2881_17_13 | 12025 | 14064 | - | 3.A.16.1.2 |
Gene ID: HRGMv2_2881_17_9
Type: TC
Location: 7115 - 8050 (-)
Type: TC
Location: 7115 - 8050 (-)
Gene ID: HRGMv2_2881_17_10
Type: TC
Location: 8054 - 8752 (-)
Type: TC
Location: 8054 - 8752 (-)
Gene ID: HRGMv2_2881_17_11
Type: pfam
Location: 9117 - 10001 (+)
Type: pfam
Location: 9117 - 10001 (+)
Gene ID: HRGMv2_2881_17_12
Type: CAZyme
Location: 10060 - 11949 (-)
Type: CAZyme
Location: 10060 - 11949 (-)
Gene ID: HRGMv2_2881_17_13
Type: TC
Location: 12025 - 14064 (-)
Type: TC
Location: 12025 - 14064 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
CAG-390
Species
CAG-390 sp000437015
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.