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Cluster: HRGMv2_2880_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2880_23 HRGMv2_2880_23_18 23294 24424 + 2.A.45.2.6
TC HRGMv2_2880_23 HRGMv2_2880_23_19 24740 26374 + 2.A.58.2.2
NULL(UNKNOWN) HRGMv2_2880_23 HRGMv2_2880_23_20 26497 26931 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2880_23 HRGMv2_2880_23_21 27005 27472 + 9.A.24.1.7
NULL(UNKNOWN) HRGMv2_2880_23 HRGMv2_2880_23_22 27604 28110 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2880_23 HRGMv2_2880_23_23 28110 28640 - DUF4430
TC HRGMv2_2880_23 HRGMv2_2880_23_24 29112 31181 - 9.A.8.1.5
STP HRGMv2_2880_23 HRGMv2_2880_23_25 31242 31481 - FeoA
CAZyme HRGMv2_2880_23 HRGMv2_2880_23_26 32086 33009 - CE4
pfam HRGMv2_2880_23 HRGMv2_2880_23_27 33186 33623 - HSP20 | ArsA_HSP20
TC HRGMv2_2880_23 HRGMv2_2880_23_28 33843 34484 - 2.A.115.2.8
Gene ID: HRGMv2_2880_23_18
Type: TC
Location: 23294 - 24424 (+)
Gene ID: HRGMv2_2880_23_19
Type: TC
Location: 24740 - 26374 (+)
Gene ID: HRGMv2_2880_23_20
Type:
Location: 26497 - 26931 (+)
Gene ID: HRGMv2_2880_23_21
Type: TC
Location: 27005 - 27472 (+)
Gene ID: HRGMv2_2880_23_22
Type:
Location: 27604 - 28110 (-)
Gene ID: HRGMv2_2880_23_23
Type: pfam
Location: 28110 - 28640 (-)
Gene ID: HRGMv2_2880_23_24
Type: TC
Location: 29112 - 31181 (-)
Gene ID: HRGMv2_2880_23_25
Type: STP
Location: 31242 - 31481 (-)
Gene ID: HRGMv2_2880_23_26
Type: CAZyme
Location: 32086 - 33009 (-)
Gene ID: HRGMv2_2880_23_27
Type: pfam
Location: 33186 - 33623 (-)
Gene ID: HRGMv2_2880_23_28
Type: TC
Location: 33843 - 34484 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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