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Cluster: HRGMv2_2880_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2880_11 HRGMv2_2880_11_58 62780 63631 - 3.A.1.1.34
TC HRGMv2_2880_11 HRGMv2_2880_11_59 63647 64546 - 3.A.1.1.20
TC HRGMv2_2880_11 HRGMv2_2880_11_60 64673 66013 - 3.A.1.1.40
TF HRGMv2_2880_11 HRGMv2_2880_11_61 66019 67914 - LacI
TF HRGMv2_2880_11 HRGMv2_2880_11_62 68191 69750 - HTH_AraC | HTH_AraC
TC HRGMv2_2880_11 HRGMv2_2880_11_63 69774 71615 - 9.B.33.1.1
TC HRGMv2_2880_11 HRGMv2_2880_11_64 71785 72624 - 3.A.1.1.28
TC HRGMv2_2880_11 HRGMv2_2880_11_65 72621 73541 - 3.A.1.1.28
STP HRGMv2_2880_11 HRGMv2_2880_11_66 73697 75064 - SBP_bac_1
CAZyme HRGMv2_2880_11 HRGMv2_2880_11_67 75283 77628 - GH31_3
pfam HRGMv2_2880_11 HRGMv2_2880_11_68 77731 78813 - GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
CAZyme HRGMv2_2880_11 HRGMv2_2880_11_69 78845 80638 - CBM34 | GH13_20
Gene ID: HRGMv2_2880_11_58
Type: TC
Location: 62780 - 63631 (-)
Gene ID: HRGMv2_2880_11_59
Type: TC
Location: 63647 - 64546 (-)
Gene ID: HRGMv2_2880_11_60
Type: TC
Location: 64673 - 66013 (-)
Gene ID: HRGMv2_2880_11_61
Type: TF
Location: 66019 - 67914 (-)
Gene ID: HRGMv2_2880_11_62
Type: TF
Location: 68191 - 69750 (-)
Gene ID: HRGMv2_2880_11_63
Type: TC
Location: 69774 - 71615 (-)
Gene ID: HRGMv2_2880_11_64
Type: TC
Location: 71785 - 72624 (-)
Gene ID: HRGMv2_2880_11_65
Type: TC
Location: 72621 - 73541 (-)
Gene ID: HRGMv2_2880_11_66
Type: STP
Location: 73697 - 75064 (-)
Gene ID: HRGMv2_2880_11_67
Type: CAZyme
Location: 75283 - 77628 (-)
Gene ID: HRGMv2_2880_11_68
Type: pfam
Location: 77731 - 78813 (-)
Gene ID: HRGMv2_2880_11_69
Type: CAZyme
Location: 78845 - 80638 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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