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Cluster: HRGMv2_2866_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2866_25 HRGMv2_2866_25_1 504 2237 - 3.A.1.21.1
TC HRGMv2_2866_25 HRGMv2_2866_25_2 2241 3977 - 3.A.1.21.1
pfam HRGMv2_2866_25 HRGMv2_2866_25_3 3967 4560 - Trep_Strep
TC HRGMv2_2866_25 HRGMv2_2866_25_4 4576 6759 - 3.A.1.31.1
STP HRGMv2_2866_25 HRGMv2_2866_25_5 6836 7441 - TetR_N
CAZyme HRGMv2_2866_25 HRGMv2_2866_25_6 7714 9714 - GH31_4
TF HRGMv2_2866_25 HRGMv2_2866_25_7 9846 10793 + HTH_AraC | HTH_AraC
TC HRGMv2_2866_25 HRGMv2_2866_25_8 10981 11346 + 1.E.14.1.1
TC HRGMv2_2866_25 HRGMv2_2866_25_9 11339 12031 + 2.A.122.1.2
TF HRGMv2_2866_25 HRGMv2_2866_25_10 12042 12668 + GntR
CAZyme HRGMv2_2866_25 HRGMv2_2866_25_11 12726 15728 - GH2
Gene ID: HRGMv2_2866_25_1
Type: TC
Location: 504 - 2237 (-)
Gene ID: HRGMv2_2866_25_2
Type: TC
Location: 2241 - 3977 (-)
Gene ID: HRGMv2_2866_25_3
Type: pfam
Location: 3967 - 4560 (-)
Gene ID: HRGMv2_2866_25_4
Type: TC
Location: 4576 - 6759 (-)
Gene ID: HRGMv2_2866_25_5
Type: STP
Location: 6836 - 7441 (-)
Gene ID: HRGMv2_2866_25_6
Type: CAZyme
Location: 7714 - 9714 (-)
Gene ID: HRGMv2_2866_25_7
Type: TF
Location: 9846 - 10793 (+)
Gene ID: HRGMv2_2866_25_8
Type: TC
Location: 10981 - 11346 (+)
Gene ID: HRGMv2_2866_25_9
Type: TC
Location: 11339 - 12031 (+)
Gene ID: HRGMv2_2866_25_10
Type: TF
Location: 12042 - 12668 (+)
Gene ID: HRGMv2_2866_25_11
Type: CAZyme
Location: 12726 - 15728 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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