Cluster: HRGMv2_2863_CGC6
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2863
- CGC Family ID: CGCFAM_03499
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2863_2 | HRGMv2_2863_2_114 | 113350 | 114348 | - | 9.B.157.1.1 |
| TC | HRGMv2_2863_2 | HRGMv2_2863_2_115 | 114498 | 116459 | - | 2.A.2.3.5 |
| CAZyme | HRGMv2_2863_2 | HRGMv2_2863_2_116 | 116557 | 117411 | - | CE4 |
| pfam | HRGMv2_2863_2 | HRGMv2_2863_2_117 | 117475 | 118593 | - | RF-1 | PCRF |
| TC | HRGMv2_2863_2 | HRGMv2_2863_2_118 | 118768 | 120126 | + | 2.A.45.2.2 |
| TC | HRGMv2_2863_2 | HRGMv2_2863_2_119 | 120141 | 120734 | + | 2.A.115.2.14 |
| NULL(UNKNOWN) | HRGMv2_2863_2 | HRGMv2_2863_2_120 | 120845 | 121456 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2863_2 | HRGMv2_2863_2_121 | 121485 | 121697 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2863_2 | HRGMv2_2863_2_122 | 121757 | 123184 | - | GT5 |
| pfam | HRGMv2_2863_2 | HRGMv2_2863_2_123 | 123197 | 124318 | - | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_2863_2 | HRGMv2_2863_2_124 | 124321 | 125526 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_2863_2 | HRGMv2_2863_2_125 | 125545 | 127599 | - | GH13_9 |
Gene ID: HRGMv2_2863_2_114
Type: TC
Location: 113350 - 114348 (-)
Type: TC
Location: 113350 - 114348 (-)
Gene ID: HRGMv2_2863_2_115
Type: TC
Location: 114498 - 116459 (-)
Type: TC
Location: 114498 - 116459 (-)
Gene ID: HRGMv2_2863_2_116
Type: CAZyme
Location: 116557 - 117411 (-)
Type: CAZyme
Location: 116557 - 117411 (-)
Gene ID: HRGMv2_2863_2_117
Type: pfam
Location: 117475 - 118593 (-)
Type: pfam
Location: 117475 - 118593 (-)
Gene ID: HRGMv2_2863_2_118
Type: TC
Location: 118768 - 120126 (+)
Type: TC
Location: 118768 - 120126 (+)
Gene ID: HRGMv2_2863_2_119
Type: TC
Location: 120141 - 120734 (+)
Type: TC
Location: 120141 - 120734 (+)
Gene ID: HRGMv2_2863_2_120
Type:
Location: 120845 - 121456 (+)
Type:
Location: 120845 - 121456 (+)
Gene ID: HRGMv2_2863_2_121
Type:
Location: 121485 - 121697 (+)
Type:
Location: 121485 - 121697 (+)
Gene ID: HRGMv2_2863_2_122
Type: CAZyme
Location: 121757 - 123184 (-)
Type: CAZyme
Location: 121757 - 123184 (-)
Gene ID: HRGMv2_2863_2_123
Type: pfam
Location: 123197 - 124318 (-)
Type: pfam
Location: 123197 - 124318 (-)
Gene ID: HRGMv2_2863_2_124
Type: pfam
Location: 124321 - 125526 (-)
Type: pfam
Location: 124321 - 125526 (-)
Gene ID: HRGMv2_2863_2_125
Type: CAZyme
Location: 125545 - 127599 (-)
Type: CAZyme
Location: 125545 - 127599 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Species
Eubacterium_R coprostanoligenes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2863_2_122 | vegan > omnivore | 1.12801 | 0.03451 |
| HRGMv2_2863_2_122 | vegetarian > omnivore | 1.98640 | 0.04596 |
| HRGMv2_2863_2_124 | vegan > omnivore | 1.59924 | 0.03451 |
| HRGMv2_2863_2_124 | vegetarian > omnivore | 1.56628 | 0.04596 |