Cluster: HRGMv2_2863_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2863
- CGC Family ID: CGCFAM_10198
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2863_16 | HRGMv2_2863_16_11 | 14950 | 16137 | + | GT4 |
| pfam | HRGMv2_2863_16 | HRGMv2_2863_16_12 | 16474 | 16815 | - | HypA |
| pfam | HRGMv2_2863_16 | HRGMv2_2863_16_13 | 16815 | 17486 | - | cobW |
| TC | HRGMv2_2863_16 | HRGMv2_2863_16_14 | 17596 | 19209 | - | 8.A.7.1.1 |
| STP | HRGMv2_2863_16 | HRGMv2_2863_16_15 | 19248 | 19514 | - | PTS-HPr |
| TC | HRGMv2_2863_16 | HRGMv2_2863_16_16 | 19585 | 21546 | - | 4.A.2.1.7 |
Gene ID: HRGMv2_2863_16_11
Type: CAZyme
Location: 14950 - 16137 (+)
Type: CAZyme
Location: 14950 - 16137 (+)
Gene ID: HRGMv2_2863_16_12
Type: pfam
Location: 16474 - 16815 (-)
Type: pfam
Location: 16474 - 16815 (-)
Gene ID: HRGMv2_2863_16_13
Type: pfam
Location: 16815 - 17486 (-)
Type: pfam
Location: 16815 - 17486 (-)
Gene ID: HRGMv2_2863_16_14
Type: TC
Location: 17596 - 19209 (-)
Type: TC
Location: 17596 - 19209 (-)
Gene ID: HRGMv2_2863_16_15
Type: STP
Location: 19248 - 19514 (-)
Type: STP
Location: 19248 - 19514 (-)
Gene ID: HRGMv2_2863_16_16
Type: TC
Location: 19585 - 21546 (-)
Type: TC
Location: 19585 - 21546 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Species
Eubacterium_R coprostanoligenes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2863_16_13 | vegan > omnivore | 3.84663 | 0.03451 |
| HRGMv2_2863_16_13 | vegetarian > omnivore | 3.81426 | 0.04596 |