Cluster: HRGMv2_2863_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2863
- CGC Family ID: CGCFAM_00959
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2863_12 | HRGMv2_2863_12_43 | 41397 | 42881 | + | GH43_35 |
| TC | HRGMv2_2863_12 | HRGMv2_2863_12_44 | 42878 | 43297 | + | 8.A.49.1.2 |
| CAZyme | HRGMv2_2863_12 | HRGMv2_2863_12_45 | 43356 | 44177 | + | GH1 |
| TC | HRGMv2_2863_12 | HRGMv2_2863_12_46 | 44208 | 45668 | + | 2.A.2.3.6 |
| CAZyme | HRGMv2_2863_12 | HRGMv2_2863_12_47 | 45655 | 48255 | + | CBM67 | GH78 |
Gene ID: HRGMv2_2863_12_43
Type: CAZyme
Location: 41397 - 42881 (+)
Type: CAZyme
Location: 41397 - 42881 (+)
Gene ID: HRGMv2_2863_12_44
Type: TC
Location: 42878 - 43297 (+)
Type: TC
Location: 42878 - 43297 (+)
Gene ID: HRGMv2_2863_12_45
Type: CAZyme
Location: 43356 - 44177 (+)
Type: CAZyme
Location: 43356 - 44177 (+)
Gene ID: HRGMv2_2863_12_46
Type: TC
Location: 44208 - 45668 (+)
Type: TC
Location: 44208 - 45668 (+)
Gene ID: HRGMv2_2863_12_47
Type: CAZyme
Location: 45655 - 48255 (+)
Type: CAZyme
Location: 45655 - 48255 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Species
Eubacterium_R coprostanoligenes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2863_12_47 | vegan > omnivore | 3.22081 | 0.03451 |