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Cluster: HRGMv2_2857_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2857_4 HRGMv2_2857_4_53 63974 64753 + 3.A.1.16.3
STP HRGMv2_2857_4 HRGMv2_2857_4_54 64768 65865 + SBP_bac_3
pfam HRGMv2_2857_4 HRGMv2_2857_4_55 66260 68191 - FBPase_2
TC HRGMv2_2857_4 HRGMv2_2857_4_56 68266 69900 - 8.A.7.1.1
STP HRGMv2_2857_4 HRGMv2_2857_4_57 69958 70224 - PTS-HPr
TC HRGMv2_2857_4 HRGMv2_2857_4_58 70284 72194 - 4.A.2.1.20
STP HRGMv2_2857_4 HRGMv2_2857_4_59 72228 73127 - PfkB
TF HRGMv2_2857_4 HRGMv2_2857_4_60 73129 73878 - HTH_DeoR
TC HRGMv2_2857_4 HRGMv2_2857_4_61 74785 76215 + 1.A.26.1.3
TC HRGMv2_2857_4 HRGMv2_2857_4_62 76353 78146 + 9.B.34.1.3
TC HRGMv2_2857_4 HRGMv2_2857_4_63 78318 79175 + 2.A.7.2.1
TC HRGMv2_2857_4 HRGMv2_2857_4_64 79191 79736 + 9.B.105.1.7
pfam HRGMv2_2857_4 HRGMv2_2857_4_65 79783 80589 - Zn_Ribbon_1 | Zn_ribbon_3
CAZyme HRGMv2_2857_4 HRGMv2_2857_4_66 80846 81568 - GT51
NULL(UNKNOWN) HRGMv2_2857_4 HRGMv2_2857_4_67 81735 81887 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2857_4 HRGMv2_2857_4_68 81892 83913 - 3.A.1.134.9
TC HRGMv2_2857_4 HRGMv2_2857_4_69 83913 84674 - 3.A.1.134.4
STP HRGMv2_2857_4 HRGMv2_2857_4_70 84982 85962 - HATPase_c
TF HRGMv2_2857_4 HRGMv2_2857_4_71 85969 86640 - Trans_reg_C
TC HRGMv2_2857_4 HRGMv2_2857_4_72 86911 88554 - 1.A.11.2.3
TC HRGMv2_2857_4 HRGMv2_2857_4_73 88605 90017 - 2.A.66.1.47
TC HRGMv2_2857_4 HRGMv2_2857_4_74 90091 91191 - 3.A.1.11.1
TC HRGMv2_2857_4 HRGMv2_2857_4_75 91244 92032 - 3.A.1.11.1
TC HRGMv2_2857_4 HRGMv2_2857_4_76 92055 92981 - 3.A.1.11.1
TC HRGMv2_2857_4 HRGMv2_2857_4_77 93022 94128 - 3.A.1.11.1
Gene ID: HRGMv2_2857_4_53
Type: TC
Location: 63974 - 64753 (+)
Gene ID: HRGMv2_2857_4_54
Type: STP
Location: 64768 - 65865 (+)
Gene ID: HRGMv2_2857_4_55
Type: pfam
Location: 66260 - 68191 (-)
Gene ID: HRGMv2_2857_4_56
Type: TC
Location: 68266 - 69900 (-)
Gene ID: HRGMv2_2857_4_57
Type: STP
Location: 69958 - 70224 (-)
Gene ID: HRGMv2_2857_4_58
Type: TC
Location: 70284 - 72194 (-)
Gene ID: HRGMv2_2857_4_59
Type: STP
Location: 72228 - 73127 (-)
Gene ID: HRGMv2_2857_4_60
Type: TF
Location: 73129 - 73878 (-)
Gene ID: HRGMv2_2857_4_61
Type: TC
Location: 74785 - 76215 (+)
Gene ID: HRGMv2_2857_4_62
Type: TC
Location: 76353 - 78146 (+)
Gene ID: HRGMv2_2857_4_63
Type: TC
Location: 78318 - 79175 (+)
Gene ID: HRGMv2_2857_4_64
Type: TC
Location: 79191 - 79736 (+)
Gene ID: HRGMv2_2857_4_65
Type: pfam
Location: 79783 - 80589 (-)
Gene ID: HRGMv2_2857_4_66
Type: CAZyme
Location: 80846 - 81568 (-)
Gene ID: HRGMv2_2857_4_67
Type:
Location: 81735 - 81887 (-)
Gene ID: HRGMv2_2857_4_68
Type: TC
Location: 81892 - 83913 (-)
Gene ID: HRGMv2_2857_4_69
Type: TC
Location: 83913 - 84674 (-)
Gene ID: HRGMv2_2857_4_70
Type: STP
Location: 84982 - 85962 (-)
Gene ID: HRGMv2_2857_4_71
Type: TF
Location: 85969 - 86640 (-)
Gene ID: HRGMv2_2857_4_72
Type: TC
Location: 86911 - 88554 (-)
Gene ID: HRGMv2_2857_4_73
Type: TC
Location: 88605 - 90017 (-)
Gene ID: HRGMv2_2857_4_74
Type: TC
Location: 90091 - 91191 (-)
Gene ID: HRGMv2_2857_4_75
Type: TC
Location: 91244 - 92032 (-)
Gene ID: HRGMv2_2857_4_76
Type: TC
Location: 92055 - 92981 (-)
Gene ID: HRGMv2_2857_4_77
Type: TC
Location: 93022 - 94128 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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