dbCAN Logo

Cluster: HRGMv2_2857_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2857_2 HRGMv2_2857_2_62 61664 62242 + 3.A.1.25.5
pfam HRGMv2_2857_2 HRGMv2_2857_2_63 62229 62606 + DUF1284
CAZyme HRGMv2_2857_2 HRGMv2_2857_2_64 62739 64214 + CBM91 | GH43_12
CAZyme HRGMv2_2857_2 HRGMv2_2857_2_65 64228 65499 + GH27
CAZyme HRGMv2_2857_2 HRGMv2_2857_2_66 65588 66931 + GH43_35
CAZyme HRGMv2_2857_2 HRGMv2_2857_2_67 66948 68117 + GH5_4
TF HRGMv2_2857_2 HRGMv2_2857_2_68 68387 69121 + HTH_AraC | HTH_AraC
TC HRGMv2_2857_2 HRGMv2_2857_2_69 69160 70224 - 8.A.59.4.2
TF HRGMv2_2857_2 HRGMv2_2857_2_70 70348 70587 - SpoVT_AbrB
TC HRGMv2_2857_2 HRGMv2_2857_2_71 71024 71641 + 9.B.156.3.1
TC HRGMv2_2857_2 HRGMv2_2857_2_72 71634 72155 + 9.B.156.3.1
pfam HRGMv2_2857_2 HRGMv2_2857_2_73 72136 73209 - Spore_GerAC
NULL(UNKNOWN) HRGMv2_2857_2 HRGMv2_2857_2_74 73199 74272 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2857_2 HRGMv2_2857_2_75 74265 75782 - 9.A.11.1.2
Gene ID: HRGMv2_2857_2_62
Type: TC
Location: 61664 - 62242 (+)
Gene ID: HRGMv2_2857_2_63
Type: pfam
Location: 62229 - 62606 (+)
Gene ID: HRGMv2_2857_2_64
Type: CAZyme
Location: 62739 - 64214 (+)
Gene ID: HRGMv2_2857_2_65
Type: CAZyme
Location: 64228 - 65499 (+)
Gene ID: HRGMv2_2857_2_66
Type: CAZyme
Location: 65588 - 66931 (+)
Gene ID: HRGMv2_2857_2_67
Type: CAZyme
Location: 66948 - 68117 (+)
Gene ID: HRGMv2_2857_2_68
Type: TF
Location: 68387 - 69121 (+)
Gene ID: HRGMv2_2857_2_69
Type: TC
Location: 69160 - 70224 (-)
Gene ID: HRGMv2_2857_2_70
Type: TF
Location: 70348 - 70587 (-)
Gene ID: HRGMv2_2857_2_71
Type: TC
Location: 71024 - 71641 (+)
Gene ID: HRGMv2_2857_2_72
Type: TC
Location: 71634 - 72155 (+)
Gene ID: HRGMv2_2857_2_73
Type: pfam
Location: 72136 - 73209 (-)
Gene ID: HRGMv2_2857_2_74
Type:
Location: 73199 - 74272 (-)
Gene ID: HRGMv2_2857_2_75
Type: TC
Location: 74265 - 75782 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List