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Cluster: HRGMv2_2857_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2857_2 HRGMv2_2857_2_18 16336 18417 + 4.A.1.1.14
TF HRGMv2_2857_2 HRGMv2_2857_2_19 18700 19023 + HTH_3
pfam HRGMv2_2857_2 HRGMv2_2857_2_20 19127 20500 - tRNA-synt_2b | HGTP_anticodon
TC HRGMv2_2857_2 HRGMv2_2857_2_21 20666 21628 - 2.A.6.4.2
TC HRGMv2_2857_2 HRGMv2_2857_2_22 21621 23021 - 2.A.6.4.2
TC HRGMv2_2857_2 HRGMv2_2857_2_23 23164 23781 - 2.A.115.2.14
TC HRGMv2_2857_2 HRGMv2_2857_2_24 23794 24504 - 3.A.1.4.10
TC HRGMv2_2857_2 HRGMv2_2857_2_25 24518 25288 - 3.A.1.4.10
TC HRGMv2_2857_2 HRGMv2_2857_2_26 25285 26358 - 3.A.1.4.8
TC HRGMv2_2857_2 HRGMv2_2857_2_27 26371 27252 - 3.A.1.4.10
TC HRGMv2_2857_2 HRGMv2_2857_2_28 27434 28669 - 3.A.1.4.10
CAZyme HRGMv2_2857_2 HRGMv2_2857_2_29 28941 29894 - GH113
pfam HRGMv2_2857_2 HRGMv2_2857_2_30 29908 30546 - QueH
pfam HRGMv2_2857_2 HRGMv2_2857_2_31 30549 30707 - FeoB_associated
TC HRGMv2_2857_2 HRGMv2_2857_2_32 30777 32780 - 9.A.8.1.6
Gene ID: HRGMv2_2857_2_18
Type: TC
Location: 16336 - 18417 (+)
Gene ID: HRGMv2_2857_2_19
Type: TF
Location: 18700 - 19023 (+)
Gene ID: HRGMv2_2857_2_20
Type: pfam
Location: 19127 - 20500 (-)
Gene ID: HRGMv2_2857_2_21
Type: TC
Location: 20666 - 21628 (-)
Gene ID: HRGMv2_2857_2_22
Type: TC
Location: 21621 - 23021 (-)
Gene ID: HRGMv2_2857_2_23
Type: TC
Location: 23164 - 23781 (-)
Gene ID: HRGMv2_2857_2_24
Type: TC
Location: 23794 - 24504 (-)
Gene ID: HRGMv2_2857_2_25
Type: TC
Location: 24518 - 25288 (-)
Gene ID: HRGMv2_2857_2_26
Type: TC
Location: 25285 - 26358 (-)
Gene ID: HRGMv2_2857_2_27
Type: TC
Location: 26371 - 27252 (-)
Gene ID: HRGMv2_2857_2_28
Type: TC
Location: 27434 - 28669 (-)
Gene ID: HRGMv2_2857_2_29
Type: CAZyme
Location: 28941 - 29894 (-)
Gene ID: HRGMv2_2857_2_30
Type: pfam
Location: 29908 - 30546 (-)
Gene ID: HRGMv2_2857_2_31
Type: pfam
Location: 30549 - 30707 (-)
Gene ID: HRGMv2_2857_2_32
Type: TC
Location: 30777 - 32780 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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