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Cluster: HRGMv2_2857_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2857_22 HRGMv2_2857_22_2 1959 2897 + 2.A.119.2.1
TC HRGMv2_2857_22 HRGMv2_2857_22_3 2913 4022 + 2.A.45.2.6
CAZyme HRGMv2_2857_22 HRGMv2_2857_22_4 4061 6109 + GH44
STP HRGMv2_2857_22 HRGMv2_2857_22_5 6501 8675 + GGDEF | dCache_1
TC HRGMv2_2857_22 HRGMv2_2857_22_6 8904 9863 + 2.A.19.5.2
pfam HRGMv2_2857_22 HRGMv2_2857_22_7 10039 10695 + DUF4358
TC HRGMv2_2857_22 HRGMv2_2857_22_8 11524 12864 - 2.A.66.1.33
CAZyme HRGMv2_2857_22 HRGMv2_2857_22_9 12870 15566 - GH2
Gene ID: HRGMv2_2857_22_2
Type: TC
Location: 1959 - 2897 (+)
Gene ID: HRGMv2_2857_22_3
Type: TC
Location: 2913 - 4022 (+)
Gene ID: HRGMv2_2857_22_4
Type: CAZyme
Location: 4061 - 6109 (+)
Gene ID: HRGMv2_2857_22_5
Type: STP
Location: 6501 - 8675 (+)
Gene ID: HRGMv2_2857_22_6
Type: TC
Location: 8904 - 9863 (+)
Gene ID: HRGMv2_2857_22_7
Type: pfam
Location: 10039 - 10695 (+)
Gene ID: HRGMv2_2857_22_8
Type: TC
Location: 11524 - 12864 (-)
Gene ID: HRGMv2_2857_22_9
Type: CAZyme
Location: 12870 - 15566 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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