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Cluster: HRGMv2_2857_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2857_1 HRGMv2_2857_1_21 27134 27865 + 3.A.1.26.9
pfam HRGMv2_2857_1 HRGMv2_2857_1_22 27890 28810 + SUFBD_core
CAZyme HRGMv2_2857_1 HRGMv2_2857_1_23 28822 30486 + CBM35 | GH26
TC HRGMv2_2857_1 HRGMv2_2857_1_24 31223 31849 - 9.B.28.1.2
TC HRGMv2_2857_1 HRGMv2_2857_1_25 31933 32895 - 3.A.1.1.29
TC HRGMv2_2857_1 HRGMv2_2857_1_26 32910 34400 - 3.A.1.1.29
TF HRGMv2_2857_1 HRGMv2_2857_1_27 34637 35494 + HTH_AraC | HTH_AraC
STP HRGMv2_2857_1 HRGMv2_2857_1_28 35506 36156 + HhH-GPD
TC HRGMv2_2857_1 HRGMv2_2857_1_29 36157 38157 + 2.A.16.2.2
Gene ID: HRGMv2_2857_1_21
Type: TC
Location: 27134 - 27865 (+)
Gene ID: HRGMv2_2857_1_22
Type: pfam
Location: 27890 - 28810 (+)
Gene ID: HRGMv2_2857_1_23
Type: CAZyme
Location: 28822 - 30486 (+)
Gene ID: HRGMv2_2857_1_24
Type: TC
Location: 31223 - 31849 (-)
Gene ID: HRGMv2_2857_1_25
Type: TC
Location: 31933 - 32895 (-)
Gene ID: HRGMv2_2857_1_26
Type: TC
Location: 32910 - 34400 (-)
Gene ID: HRGMv2_2857_1_27
Type: TF
Location: 34637 - 35494 (+)
Gene ID: HRGMv2_2857_1_28
Type: STP
Location: 35506 - 36156 (+)
Gene ID: HRGMv2_2857_1_29
Type: TC
Location: 36157 - 38157 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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