Cluster: HRGMv2_2853_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2853
- CGC Family ID: CGCFAM_07287
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2853_3 | HRGMv2_2853_3_71 | 64703 | 66451 | + | 2.A.58.2.2 |
| TF | HRGMv2_2853_3 | HRGMv2_2853_3_72 | 66453 | 67130 | + | Trans_reg_C |
| STP | HRGMv2_2853_3 | HRGMv2_2853_3_73 | 67132 | 68451 | + | HATPase_c | HisKA |
| CAZyme | HRGMv2_2853_3 | HRGMv2_2853_3_74 | 68518 | 69459 | - | GT2 |
| pfam | HRGMv2_2853_3 | HRGMv2_2853_3_75 | 69452 | 71935 | - | GtrA_DPMS_TM | DUF6020 |
| TC | HRGMv2_2853_3 | HRGMv2_2853_3_76 | 72015 | 73421 | - | 2.A.40.1.2 |
Gene ID: HRGMv2_2853_3_71
Type: TC
Location: 64703 - 66451 (+)
Type: TC
Location: 64703 - 66451 (+)
Gene ID: HRGMv2_2853_3_72
Type: TF
Location: 66453 - 67130 (+)
Type: TF
Location: 66453 - 67130 (+)
Gene ID: HRGMv2_2853_3_73
Type: STP
Location: 67132 - 68451 (+)
Type: STP
Location: 67132 - 68451 (+)
Gene ID: HRGMv2_2853_3_74
Type: CAZyme
Location: 68518 - 69459 (-)
Type: CAZyme
Location: 68518 - 69459 (-)
Gene ID: HRGMv2_2853_3_75
Type: pfam
Location: 69452 - 71935 (-)
Type: pfam
Location: 69452 - 71935 (-)
Gene ID: HRGMv2_2853_3_76
Type: TC
Location: 72015 - 73421 (-)
Type: TC
Location: 72015 - 73421 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Species
Eubacterium_R sp900539165
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.