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Cluster: HRGMv2_2853_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2853_5 HRGMv2_2853_5_1 317 1144 + 3.A.2.1.2
TC HRGMv2_2853_5 HRGMv2_2853_5_2 1210 1437 + 3.A.2.1.5
pfam HRGMv2_2853_5 HRGMv2_2853_5_3 1476 1964 + ATP-synt_B
TC HRGMv2_2853_5 HRGMv2_2853_5_4 1957 3975 + 3.A.2.1.6
TC HRGMv2_2853_5 HRGMv2_2853_5_5 3968 4852 + 3.A.2.1.5
TC HRGMv2_2853_5 HRGMv2_2853_5_6 4900 6282 + 3.A.2.1.5
TC HRGMv2_2853_5 HRGMv2_2853_5_7 6295 6708 + 3.A.2.1.5
CAZyme HRGMv2_2853_5 HRGMv2_2853_5_8 6783 7973 - GT4
Gene ID: HRGMv2_2853_5_1
Type: TC
Location: 317 - 1144 (+)
Gene ID: HRGMv2_2853_5_2
Type: TC
Location: 1210 - 1437 (+)
Gene ID: HRGMv2_2853_5_3
Type: pfam
Location: 1476 - 1964 (+)
Gene ID: HRGMv2_2853_5_4
Type: TC
Location: 1957 - 3975 (+)
Gene ID: HRGMv2_2853_5_5
Type: TC
Location: 3968 - 4852 (+)
Gene ID: HRGMv2_2853_5_6
Type: TC
Location: 4900 - 6282 (+)
Gene ID: HRGMv2_2853_5_7
Type: TC
Location: 6295 - 6708 (+)
Gene ID: HRGMv2_2853_5_8
Type: CAZyme
Location: 6783 - 7973 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2853_5_2 vegetarian > omnivore 1.01292 0.00711
HRGMv2_2853_5_2 vegetarian > vegan 1.97910 0.03027

🧭 Explore Read Mapping of CGC

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