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Cluster: HRGMv2_2847_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2847_8 HRGMv2_2847_8_21 26920 27654 + GH25
pfam HRGMv2_2847_8 HRGMv2_2847_8_22 27687 28118 - DUF4830
pfam HRGMv2_2847_8 HRGMv2_2847_8_23 28162 28941 + PseudoU_synth_2
TC HRGMv2_2847_8 HRGMv2_2847_8_24 29055 30173 + 3.A.1.1.22
pfam HRGMv2_2847_8 HRGMv2_2847_8_25 31537 33573 - DEAD | Helicase_C | ResIII | RecG_wedge | RecG_dom3_C
TF HRGMv2_2847_8 HRGMv2_2847_8_26 33765 34133 + GntR
TC HRGMv2_2847_8 HRGMv2_2847_8_27 34130 34978 + 3.A.1.132.6
Gene ID: HRGMv2_2847_8_21
Type: CAZyme
Location: 26920 - 27654 (+)
Gene ID: HRGMv2_2847_8_22
Type: pfam
Location: 27687 - 28118 (-)
Gene ID: HRGMv2_2847_8_23
Type: pfam
Location: 28162 - 28941 (+)
Gene ID: HRGMv2_2847_8_24
Type: TC
Location: 29055 - 30173 (+)
Gene ID: HRGMv2_2847_8_25
Type: pfam
Location: 31537 - 33573 (-)
Gene ID: HRGMv2_2847_8_26
Type: TF
Location: 33765 - 34133 (+)
Gene ID: HRGMv2_2847_8_27
Type: TC
Location: 34130 - 34978 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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