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Cluster: HRGMv2_2847_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2847_5 HRGMv2_2847_5_19 22532 24397 - GH5
pfam HRGMv2_2847_5 HRGMv2_2847_5_20 24514 25437 - NadA
TC HRGMv2_2847_5 HRGMv2_2847_5_21 25455 26816 - 2.A.86.1.8
TC HRGMv2_2847_5 HRGMv2_2847_5_22 26907 28265 - 2.A.22.5.3
pfam HRGMv2_2847_5 HRGMv2_2847_5_23 28414 30762 + UvrD-helicase | UvrD-helicase | AAA_19 | UvrD_C | UvrD_C_2 | PcrA_UvrD_tudor
NULL(UNKNOWN) HRGMv2_2847_5 HRGMv2_2847_5_24 30823 30972 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2847_5 HRGMv2_2847_5_25 31182 33560 + 3.A.9.1.2
pfam HRGMv2_2847_5 HRGMv2_2847_5_26 33971 35047 + Phage_integrase | Phage_int_SAM_3
TC HRGMv2_2847_5 HRGMv2_2847_5_27 35199 36599 + 9.B.18.1.3
CAZyme HRGMv2_2847_5 HRGMv2_2847_5_28 36607 37431 + GT2
CAZyme HRGMv2_2847_5 HRGMv2_2847_5_29 37428 38516 + GT4
pfam HRGMv2_2847_5 HRGMv2_2847_5_30 38522 39454 + ATPgrasp_TupA
pfam HRGMv2_2847_5 HRGMv2_2847_5_31 39476 40576 + EpsG
TC HRGMv2_2847_5 HRGMv2_2847_5_32 40678 42216 + 2.A.66.1.40
pfam HRGMv2_2847_5 HRGMv2_2847_5_33 42232 43293 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
pfam HRGMv2_2847_5 HRGMv2_2847_5_34 43305 44537 + UDPG_MGDP_dh | NAD_Gly3P_dh_N | 3HCDH_N | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
TC HRGMv2_2847_5 HRGMv2_2847_5_35 44551 46032 + 8.A.3.2.1
Gene ID: HRGMv2_2847_5_19
Type: CAZyme
Location: 22532 - 24397 (-)
Gene ID: HRGMv2_2847_5_20
Type: pfam
Location: 24514 - 25437 (-)
Gene ID: HRGMv2_2847_5_21
Type: TC
Location: 25455 - 26816 (-)
Gene ID: HRGMv2_2847_5_22
Type: TC
Location: 26907 - 28265 (-)
Gene ID: HRGMv2_2847_5_23
Type: pfam
Location: 28414 - 30762 (+)
Gene ID: HRGMv2_2847_5_24
Type:
Location: 30823 - 30972 (-)
Gene ID: HRGMv2_2847_5_25
Type: TC
Location: 31182 - 33560 (+)
Gene ID: HRGMv2_2847_5_26
Type: pfam
Location: 33971 - 35047 (+)
Gene ID: HRGMv2_2847_5_27
Type: TC
Location: 35199 - 36599 (+)
Gene ID: HRGMv2_2847_5_28
Type: CAZyme
Location: 36607 - 37431 (+)
Gene ID: HRGMv2_2847_5_29
Type: CAZyme
Location: 37428 - 38516 (+)
Gene ID: HRGMv2_2847_5_30
Type: pfam
Location: 38522 - 39454 (+)
Gene ID: HRGMv2_2847_5_31
Type: pfam
Location: 39476 - 40576 (+)
Gene ID: HRGMv2_2847_5_32
Type: TC
Location: 40678 - 42216 (+)
Gene ID: HRGMv2_2847_5_33
Type: pfam
Location: 42232 - 43293 (+)
Gene ID: HRGMv2_2847_5_34
Type: pfam
Location: 43305 - 44537 (+)
Gene ID: HRGMv2_2847_5_35
Type: TC
Location: 44551 - 46032 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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