Cluster: HRGMv2_2839_CGC3
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2839
- CGC Family ID: CGCFAM_00004
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2839_1 | HRGMv2_2839_1_261 | 281221 | 282525 | - | GH29 |
| CAZyme | HRGMv2_2839_1 | HRGMv2_2839_1_262 | 282547 | 284781 | - | GH31 |
| NULL(UNKNOWN) | HRGMv2_2839_1 | HRGMv2_2839_1_263 | 284783 | 285100 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2839_1 | HRGMv2_2839_1_264 | 285097 | 287016 | - | GH13_39 |
| CAZyme | HRGMv2_2839_1 | HRGMv2_2839_1_265 | 287092 | 289515 | - | GT35 |
| CAZyme | HRGMv2_2839_1 | HRGMv2_2839_1_266 | 289567 | 291000 | - | GT5 |
| pfam | HRGMv2_2839_1 | HRGMv2_2839_1_267 | 291019 | 292152 | - | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_2839_1 | HRGMv2_2839_1_268 | 292172 | 293374 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_2839_1 | HRGMv2_2839_1_269 | 293416 | 295365 | - | CBM48 | GH13_9 |
| TC | HRGMv2_2839_1 | HRGMv2_2839_1_270 | 295606 | 296211 | - | 3.A.1.17.8 |
Gene ID: HRGMv2_2839_1_261
Type: CAZyme
Location: 281221 - 282525 (-)
Type: CAZyme
Location: 281221 - 282525 (-)
Gene ID: HRGMv2_2839_1_262
Type: CAZyme
Location: 282547 - 284781 (-)
Type: CAZyme
Location: 282547 - 284781 (-)
Gene ID: HRGMv2_2839_1_263
Type:
Location: 284783 - 285100 (-)
Type:
Location: 284783 - 285100 (-)
Gene ID: HRGMv2_2839_1_264
Type: CAZyme
Location: 285097 - 287016 (-)
Type: CAZyme
Location: 285097 - 287016 (-)
Gene ID: HRGMv2_2839_1_265
Type: CAZyme
Location: 287092 - 289515 (-)
Type: CAZyme
Location: 287092 - 289515 (-)
Gene ID: HRGMv2_2839_1_266
Type: CAZyme
Location: 289567 - 291000 (-)
Type: CAZyme
Location: 289567 - 291000 (-)
Gene ID: HRGMv2_2839_1_267
Type: pfam
Location: 291019 - 292152 (-)
Type: pfam
Location: 291019 - 292152 (-)
Gene ID: HRGMv2_2839_1_268
Type: pfam
Location: 292172 - 293374 (-)
Type: pfam
Location: 292172 - 293374 (-)
Gene ID: HRGMv2_2839_1_269
Type: CAZyme
Location: 293416 - 295365 (-)
Type: CAZyme
Location: 293416 - 295365 (-)
Gene ID: HRGMv2_2839_1_270
Type: TC
Location: 295606 - 296211 (-)
Type: TC
Location: 295606 - 296211 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
CAG-724
Species
CAG-724 sp905202255
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.