Cluster: HRGMv2_2839_CGC1
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2839
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2839_1 | HRGMv2_2839_1_76 | 80792 | 81685 | - | 3.A.1.1.20 |
| TC | HRGMv2_2839_1 | HRGMv2_2839_1_77 | 81698 | 82651 | - | 3.A.1.1.17 |
| TC | HRGMv2_2839_1 | HRGMv2_2839_1_78 | 82654 | 83757 | - | 3.A.1.1.38 |
| pfam | HRGMv2_2839_1 | HRGMv2_2839_1_79 | 83982 | 84734 | - | RDD |
| pfam | HRGMv2_2839_1 | HRGMv2_2839_1_80 | 84885 | 85589 | - | Hydrolase | Hydrolase_like | HAD_2 |
| TC | HRGMv2_2839_1 | HRGMv2_2839_1_81 | 85798 | 88068 | + | 3.A.1.135.5 |
| pfam | HRGMv2_2839_1 | HRGMv2_2839_1_82 | 88083 | 88571 | + | DUF1854 |
| pfam | HRGMv2_2839_1 | HRGMv2_2839_1_83 | 88582 | 88908 | + | CdAMP_rec |
| CAZyme | HRGMv2_2839_1 | HRGMv2_2839_1_84 | 88965 | 92069 | - | GH106 |
| TC | HRGMv2_2839_1 | HRGMv2_2839_1_85 | 92175 | 92969 | - | 3.A.1.3.14 |
| TC | HRGMv2_2839_1 | HRGMv2_2839_1_86 | 92981 | 93628 | - | 3.A.1.3.14 |
| STP | HRGMv2_2839_1 | HRGMv2_2839_1_87 | 93648 | 94454 | - | SBP_bac_3 |
| pfam | HRGMv2_2839_1 | HRGMv2_2839_1_88 | 94578 | 96173 | - | DUF6056 |
| CAZyme | HRGMv2_2839_1 | HRGMv2_2839_1_89 | 96350 | 98989 | + | CBM67 | GH78 |
Gene ID: HRGMv2_2839_1_76
Type: TC
Location: 80792 - 81685 (-)
Type: TC
Location: 80792 - 81685 (-)
Gene ID: HRGMv2_2839_1_77
Type: TC
Location: 81698 - 82651 (-)
Type: TC
Location: 81698 - 82651 (-)
Gene ID: HRGMv2_2839_1_78
Type: TC
Location: 82654 - 83757 (-)
Type: TC
Location: 82654 - 83757 (-)
Gene ID: HRGMv2_2839_1_79
Type: pfam
Location: 83982 - 84734 (-)
Type: pfam
Location: 83982 - 84734 (-)
Gene ID: HRGMv2_2839_1_80
Type: pfam
Location: 84885 - 85589 (-)
Type: pfam
Location: 84885 - 85589 (-)
Gene ID: HRGMv2_2839_1_81
Type: TC
Location: 85798 - 88068 (+)
Type: TC
Location: 85798 - 88068 (+)
Gene ID: HRGMv2_2839_1_82
Type: pfam
Location: 88083 - 88571 (+)
Type: pfam
Location: 88083 - 88571 (+)
Gene ID: HRGMv2_2839_1_83
Type: pfam
Location: 88582 - 88908 (+)
Type: pfam
Location: 88582 - 88908 (+)
Gene ID: HRGMv2_2839_1_84
Type: CAZyme
Location: 88965 - 92069 (-)
Type: CAZyme
Location: 88965 - 92069 (-)
Gene ID: HRGMv2_2839_1_85
Type: TC
Location: 92175 - 92969 (-)
Type: TC
Location: 92175 - 92969 (-)
Gene ID: HRGMv2_2839_1_86
Type: TC
Location: 92981 - 93628 (-)
Type: TC
Location: 92981 - 93628 (-)
Gene ID: HRGMv2_2839_1_87
Type: STP
Location: 93648 - 94454 (-)
Type: STP
Location: 93648 - 94454 (-)
Gene ID: HRGMv2_2839_1_88
Type: pfam
Location: 94578 - 96173 (-)
Type: pfam
Location: 94578 - 96173 (-)
Gene ID: HRGMv2_2839_1_89
Type: CAZyme
Location: 96350 - 98989 (+)
Type: CAZyme
Location: 96350 - 98989 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
CAG-272
Genus
CAG-724
Species
CAG-724 sp905202255
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.