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Cluster: HRGMv2_2832_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2832_11 HRGMv2_2832_11_9 12362 13285 + 3.A.1.1.25
TC HRGMv2_2832_11 HRGMv2_2832_11_10 13275 14249 + 3.A.1.1.36
STP HRGMv2_2832_11 HRGMv2_2832_11_11 14347 15723 + SBP_bac_1
CAZyme HRGMv2_2832_11 HRGMv2_2832_11_12 15733 17763 + GH28
CAZyme HRGMv2_2832_11 HRGMv2_2832_11_13 17849 18898 + GH179
pfam HRGMv2_2832_11 HRGMv2_2832_11_14 18915 19769 + AP_endonuc_2
NULL(UNKNOWN) HRGMv2_2832_11 HRGMv2_2832_11_15 19791 20636 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2832_11 HRGMv2_2832_11_16 20750 24511 + GH28
CAZyme HRGMv2_2832_11 HRGMv2_2832_11_17 24719 27142 + GH2
Gene ID: HRGMv2_2832_11_9
Type: TC
Location: 12362 - 13285 (+)
Gene ID: HRGMv2_2832_11_10
Type: TC
Location: 13275 - 14249 (+)
Gene ID: HRGMv2_2832_11_11
Type: STP
Location: 14347 - 15723 (+)
Gene ID: HRGMv2_2832_11_12
Type: CAZyme
Location: 15733 - 17763 (+)
Gene ID: HRGMv2_2832_11_13
Type: CAZyme
Location: 17849 - 18898 (+)
Gene ID: HRGMv2_2832_11_14
Type: pfam
Location: 18915 - 19769 (+)
Gene ID: HRGMv2_2832_11_15
Type:
Location: 19791 - 20636 (+)
Gene ID: HRGMv2_2832_11_16
Type: CAZyme
Location: 20750 - 24511 (+)
Gene ID: HRGMv2_2832_11_17
Type: CAZyme
Location: 24719 - 27142 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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