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Cluster: HRGMv2_2832_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2832_40 HRGMv2_2832_40_7 7950 8165 + 2.A.78.1.1
TC HRGMv2_2832_40 HRGMv2_2832_40_8 8159 8437 + 2.A.78.1.1
pfam HRGMv2_2832_40 HRGMv2_2832_40_9 8476 9306 + DUF4299
TC HRGMv2_2832_40 HRGMv2_2832_40_10 9399 11984 - 3.A.3.2.21
pfam HRGMv2_2832_40 HRGMv2_2832_40_11 11984 12841 - AP_endonuc_2
pfam HRGMv2_2832_40 HRGMv2_2832_40_12 12843 13346 - PGP_phosphatase | Hydrolase_like
TC HRGMv2_2832_40 HRGMv2_2832_40_13 13349 14257 - 3.A.11.1.4
TC HRGMv2_2832_40 HRGMv2_2832_40_14 14241 16721 - 3.A.12.1.1
peptidase HRGMv2_2832_40 HRGMv2_2832_40_15 16764 17456 - S14.UPW
CAZyme HRGMv2_2832_40 HRGMv2_2832_40_16 17566 18687 - GT28
Gene ID: HRGMv2_2832_40_7
Type: TC
Location: 7950 - 8165 (+)
Gene ID: HRGMv2_2832_40_8
Type: TC
Location: 8159 - 8437 (+)
Gene ID: HRGMv2_2832_40_9
Type: pfam
Location: 8476 - 9306 (+)
Gene ID: HRGMv2_2832_40_10
Type: TC
Location: 9399 - 11984 (-)
Gene ID: HRGMv2_2832_40_11
Type: pfam
Location: 11984 - 12841 (-)
Gene ID: HRGMv2_2832_40_12
Type: pfam
Location: 12843 - 13346 (-)
Gene ID: HRGMv2_2832_40_13
Type: TC
Location: 13349 - 14257 (-)
Gene ID: HRGMv2_2832_40_14
Type: TC
Location: 14241 - 16721 (-)
Gene ID: HRGMv2_2832_40_15
Type: peptidase
Location: 16764 - 17456 (-)
Gene ID: HRGMv2_2832_40_16
Type: CAZyme
Location: 17566 - 18687 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2832_40_10 vegetarian > vegan 2.08288 0.00082
HRGMv2_2832_40_13 vegetarian > vegan 1.87153 0.00082
HRGMv2_2832_40_14 vegetarian > vegan 1.81342 0.00082

🧭 Explore Read Mapping of CGC

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