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Cluster: HRGMv2_2832_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2832_13 HRGMv2_2832_13_13 12586 14559 + 3.A.7.13.2
TF HRGMv2_2832_13 HRGMv2_2832_13_14 14546 14806 + Rrf2
TF HRGMv2_2832_13 HRGMv2_2832_13_15 15168 15977 - HTH_AraC
CAZyme HRGMv2_2832_13 HRGMv2_2832_13_16 16276 17298 + GH16_3
STP HRGMv2_2832_13 HRGMv2_2832_13_17 17321 20161 + SBP_bac_1
TC HRGMv2_2832_13 HRGMv2_2832_13_18 20179 21093 + 3.A.1.1.11
TC HRGMv2_2832_13 HRGMv2_2832_13_19 21186 21995 + 3.A.1.1.41
pfam HRGMv2_2832_13 HRGMv2_2832_13_20 22007 24124 + Yip1
pfam HRGMv2_2832_13 HRGMv2_2832_13_21 24140 26392 + DUF5696
TC HRGMv2_2832_13 HRGMv2_2832_13_22 26379 27272 + 3.A.1.1.20
TC HRGMv2_2832_13 HRGMv2_2832_13_23 27287 28276 + 3.A.1.1.20
STP HRGMv2_2832_13 HRGMv2_2832_13_24 28328 29650 + SBP_bac_1
pfam HRGMv2_2832_13 HRGMv2_2832_13_25 29748 32729 + Dockerin_1
CAZyme HRGMv2_2832_13 HRGMv2_2832_13_26 32804 33979 + GH16_3
pfam HRGMv2_2832_13 HRGMv2_2832_13_27 34035 39509 + Flg_new
sulfatase HRGMv2_2832_13 HRGMv2_2832_13_28 39576 41489 + S1_4
CAZyme HRGMv2_2832_13 HRGMv2_2832_13_29 41517 43166 + GH78
CAZyme HRGMv2_2832_13 HRGMv2_2832_13_30 43172 45346 + GH3
Gene ID: HRGMv2_2832_13_13
Type: TC
Location: 12586 - 14559 (+)
Gene ID: HRGMv2_2832_13_14
Type: TF
Location: 14546 - 14806 (+)
Gene ID: HRGMv2_2832_13_15
Type: TF
Location: 15168 - 15977 (-)
Gene ID: HRGMv2_2832_13_16
Type: CAZyme
Location: 16276 - 17298 (+)
Gene ID: HRGMv2_2832_13_17
Type: STP
Location: 17321 - 20161 (+)
Gene ID: HRGMv2_2832_13_18
Type: TC
Location: 20179 - 21093 (+)
Gene ID: HRGMv2_2832_13_19
Type: TC
Location: 21186 - 21995 (+)
Gene ID: HRGMv2_2832_13_20
Type: pfam
Location: 22007 - 24124 (+)
Gene ID: HRGMv2_2832_13_21
Type: pfam
Location: 24140 - 26392 (+)
Gene ID: HRGMv2_2832_13_22
Type: TC
Location: 26379 - 27272 (+)
Gene ID: HRGMv2_2832_13_23
Type: TC
Location: 27287 - 28276 (+)
Gene ID: HRGMv2_2832_13_24
Type: STP
Location: 28328 - 29650 (+)
Gene ID: HRGMv2_2832_13_25
Type: pfam
Location: 29748 - 32729 (+)
Gene ID: HRGMv2_2832_13_26
Type: CAZyme
Location: 32804 - 33979 (+)
Gene ID: HRGMv2_2832_13_27
Type: pfam
Location: 34035 - 39509 (+)
Gene ID: HRGMv2_2832_13_28
Type: sulfatase
Location: 39576 - 41489 (+)
Gene ID: HRGMv2_2832_13_29
Type: CAZyme
Location: 41517 - 43166 (+)
Gene ID: HRGMv2_2832_13_30
Type: CAZyme
Location: 43172 - 45346 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2832_13_13 vegetarian > vegan 1.90419 0.00082
HRGMv2_2832_13_16 vegetarian > vegan 3.17280 0.00082
HRGMv2_2832_13_17 vegetarian > vegan 4.70921 0.00082
HRGMv2_2832_13_18 vegetarian > vegan 16.91553 0.00082
HRGMv2_2832_13_19 vegetarian > vegan 1.27146 0.00082
HRGMv2_2832_13_20 vegetarian > vegan 17.14826 0.00082
HRGMv2_2832_13_21 vegetarian > vegan 3.25142 0.00082
HRGMv2_2832_13_22 vegetarian > vegan 2.49459 0.00082
HRGMv2_2832_13_23 vegetarian > vegan 3.60206 0.00082
HRGMv2_2832_13_24 vegetarian > vegan 2.32058 0.00082
HRGMv2_2832_13_25 vegetarian > vegan 1.23435 0.00082
HRGMv2_2832_13_26 vegetarian > vegan 2.10985 0.00082
HRGMv2_2832_13_27 vegetarian > vegan 4.37802 0.00082

🧭 Explore Read Mapping of CGC

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