Cluster: HRGMv2_2827_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2827
- CGC Family ID: CGCFAM_01051
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2827_7 | HRGMv2_2827_7_34 | 45073 | 46602 | - | 2.A.80.1.1 |
| TC | HRGMv2_2827_7 | HRGMv2_2827_7_35 | 46737 | 47729 | - | 2.A.80.1.4 |
| pfam | HRGMv2_2827_7 | HRGMv2_2827_7_36 | 47801 | 48289 | - | TctB |
| CAZyme | HRGMv2_2827_7 | HRGMv2_2827_7_37 | 48300 | 49127 | - | CE4 |
Gene ID: HRGMv2_2827_7_34
Type: TC
Location: 45073 - 46602 (-)
Type: TC
Location: 45073 - 46602 (-)
Gene ID: HRGMv2_2827_7_35
Type: TC
Location: 46737 - 47729 (-)
Type: TC
Location: 46737 - 47729 (-)
Gene ID: HRGMv2_2827_7_36
Type: pfam
Location: 47801 - 48289 (-)
Type: pfam
Location: 47801 - 48289 (-)
Gene ID: HRGMv2_2827_7_37
Type: CAZyme
Location: 48300 - 49127 (-)
Type: CAZyme
Location: 48300 - 49127 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Vescimonas
Species
Vescimonas sp003487665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2827_7_34 | vegetarian > vegan | 5.63446 | 0.01867 |
| HRGMv2_2827_7_35 | vegetarian > omnivore | 1.83390 | 0.03783 |
| HRGMv2_2827_7_35 | vegetarian > vegan | 5.87235 | 0.01867 |
| HRGMv2_2827_7_36 | vegetarian > omnivore | 1.81584 | 0.03783 |
| HRGMv2_2827_7_36 | vegetarian > vegan | 4.93537 | 0.01867 |
| HRGMv2_2827_7_37 | vegetarian > omnivore | 1.81319 | 0.03783 |
| HRGMv2_2827_7_37 | vegetarian > vegan | 5.70680 | 0.01867 |