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Cluster: HRGMv2_2820_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2820_2 HRGMv2_2820_2_219 218680 220089 + 2.A.2.3.1
CAZyme HRGMv2_2820_2 HRGMv2_2820_2_220 220169 222844 - GH95
STP HRGMv2_2820_2 HRGMv2_2820_2_221 222954 223619 + AraC_binding
TC HRGMv2_2820_2 HRGMv2_2820_2_222 223656 225056 - 1.A.26.1.3
NULL(UNKNOWN) HRGMv2_2820_2 HRGMv2_2820_2_223 225209 225298 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2820_2 HRGMv2_2820_2_224 225470 227341 + Radical_SAM | Radical_SAM_N | DUF3362
CAZyme HRGMv2_2820_2 HRGMv2_2820_2_225 227391 229358 + GH163
CAZyme HRGMv2_2820_2 HRGMv2_2820_2_226 229426 231417 - GH18
Gene ID: HRGMv2_2820_2_219
Type: TC
Location: 218680 - 220089 (+)
Gene ID: HRGMv2_2820_2_220
Type: CAZyme
Location: 220169 - 222844 (-)
Gene ID: HRGMv2_2820_2_221
Type: STP
Location: 222954 - 223619 (+)
Gene ID: HRGMv2_2820_2_222
Type: TC
Location: 223656 - 225056 (-)
Gene ID: HRGMv2_2820_2_223
Type:
Location: 225209 - 225298 (-)
Gene ID: HRGMv2_2820_2_224
Type: pfam
Location: 225470 - 227341 (+)
Gene ID: HRGMv2_2820_2_225
Type: CAZyme
Location: 227391 - 229358 (+)
Gene ID: HRGMv2_2820_2_226
Type: CAZyme
Location: 229426 - 231417 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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