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Cluster: HRGMv2_2820_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2820_10 HRGMv2_2820_10_30 29942 30898 - GT2
CAZyme HRGMv2_2820_10 HRGMv2_2820_10_31 30895 31911 - GT2
CAZyme HRGMv2_2820_10 HRGMv2_2820_10_32 31904 32860 - GT2
CAZyme HRGMv2_2820_10 HRGMv2_2820_10_33 32860 33810 - GT2
pfam HRGMv2_2820_10 HRGMv2_2820_10_34 33820 35010 - EpsG
CAZyme HRGMv2_2820_10 HRGMv2_2820_10_35 35085 36071 - GT2
CAZyme HRGMv2_2820_10 HRGMv2_2820_10_36 36075 37148 - GT4
CAZyme HRGMv2_2820_10 HRGMv2_2820_10_37 37145 38281 - GT4
pfam HRGMv2_2820_10 HRGMv2_2820_10_38 38286 39305 - Ldh_2
TC HRGMv2_2820_10 HRGMv2_2820_10_39 39318 39830 - 9.B.18.1.3
Gene ID: HRGMv2_2820_10_30
Type: CAZyme
Location: 29942 - 30898 (-)
Gene ID: HRGMv2_2820_10_31
Type: CAZyme
Location: 30895 - 31911 (-)
Gene ID: HRGMv2_2820_10_32
Type: CAZyme
Location: 31904 - 32860 (-)
Gene ID: HRGMv2_2820_10_33
Type: CAZyme
Location: 32860 - 33810 (-)
Gene ID: HRGMv2_2820_10_34
Type: pfam
Location: 33820 - 35010 (-)
Gene ID: HRGMv2_2820_10_35
Type: CAZyme
Location: 35085 - 36071 (-)
Gene ID: HRGMv2_2820_10_36
Type: CAZyme
Location: 36075 - 37148 (-)
Gene ID: HRGMv2_2820_10_37
Type: CAZyme
Location: 37145 - 38281 (-)
Gene ID: HRGMv2_2820_10_38
Type: pfam
Location: 38286 - 39305 (-)
Gene ID: HRGMv2_2820_10_39
Type: TC
Location: 39318 - 39830 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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