Cluster: HRGMv2_2816_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2816
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2816_1 | HRGMv2_2816_1_27 | 29908 | 30576 | + | 9.B.18.1.3 |
| CAZyme | HRGMv2_2816_1 | HRGMv2_2816_1_28 | 30576 | 31376 | + | GT2 |
| pfam | HRGMv2_2816_1 | HRGMv2_2816_1_29 | 31378 | 32658 | + | Glycos_transf_1 | Glyco_trans_1_4 |
| CAZyme | HRGMv2_2816_1 | HRGMv2_2816_1_30 | 32816 | 33676 | + | GT4 |
| CAZyme | HRGMv2_2816_1 | HRGMv2_2816_1_31 | 33689 | 34663 | + | GT2 |
Gene ID: HRGMv2_2816_1_27
Type: TC
Location: 29908 - 30576 (+)
Type: TC
Location: 29908 - 30576 (+)
Gene ID: HRGMv2_2816_1_28
Type: CAZyme
Location: 30576 - 31376 (+)
Type: CAZyme
Location: 30576 - 31376 (+)
Gene ID: HRGMv2_2816_1_29
Type: pfam
Location: 31378 - 32658 (+)
Type: pfam
Location: 31378 - 32658 (+)
Gene ID: HRGMv2_2816_1_30
Type: CAZyme
Location: 32816 - 33676 (+)
Type: CAZyme
Location: 32816 - 33676 (+)
Gene ID: HRGMv2_2816_1_31
Type: CAZyme
Location: 33689 - 34663 (+)
Type: CAZyme
Location: 33689 - 34663 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Vescimonas
Species
Vescimonas sp000435975
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2816_1_28 | vegetarian > omnivore | 1.31306 | 0.01786 |
| HRGMv2_2816_1_29 | vegetarian > omnivore | 3.13261 | 0.01786 |
| HRGMv2_2816_1_30 | vegetarian > omnivore | 4.61701 | 0.01786 |
| HRGMv2_2816_1_31 | vegetarian > omnivore | 3.67691 | 0.01786 |