Cluster: HRGMv2_2814_CGC8
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2814
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2814_7 | HRGMv2_2814_7_44 | 43434 | 44894 | - | 2.A.66.2.16 |
| pfam | HRGMv2_2814_7 | HRGMv2_2814_7_45 | 44900 | 46123 | - | Wzy_C |
| CAZyme | HRGMv2_2814_7 | HRGMv2_2814_7_46 | 46203 | 47369 | - | GT4 |
| CAZyme | HRGMv2_2814_7 | HRGMv2_2814_7_47 | 47482 | 48603 | - | GT4 |
| CAZyme | HRGMv2_2814_7 | HRGMv2_2814_7_48 | 48617 | 49678 | - | GT2 |
| pfam | HRGMv2_2814_7 | HRGMv2_2814_7_49 | 49870 | 51069 | - | FrhB_FdhB_N | FrhB_FdhB_C | Fer4_7 | Fer4_9 |
| pfam | HRGMv2_2814_7 | HRGMv2_2814_7_50 | 51094 | 52284 | - | PS_pyruv_trans |
| CAZyme | HRGMv2_2814_7 | HRGMv2_2814_7_51 | 52301 | 53386 | - | GT4 |
| pfam | HRGMv2_2814_7 | HRGMv2_2814_7_52 | 53386 | 54504 | - | GLF | NAD_binding_8 |
| pfam | HRGMv2_2814_7 | HRGMv2_2814_7_53 | 54536 | 55786 | - | UDPG_MGDP_dh | NAD_Gly3P_dh_N | 3HCDH_N | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| TC | HRGMv2_2814_7 | HRGMv2_2814_7_54 | 55901 | 56614 | - | 9.B.18.1.2 |
| pfam | HRGMv2_2814_7 | HRGMv2_2814_7_55 | 56657 | 57406 | - | CpsB_CapC |
| TC | HRGMv2_2814_7 | HRGMv2_2814_7_56 | 57399 | 58151 | - | 8.A.3.3.4 |
| TC | HRGMv2_2814_7 | HRGMv2_2814_7_57 | 58148 | 58855 | - | 8.A.3.2.4 |
Gene ID: HRGMv2_2814_7_44
Type: TC
Location: 43434 - 44894 (-)
Type: TC
Location: 43434 - 44894 (-)
Gene ID: HRGMv2_2814_7_45
Type: pfam
Location: 44900 - 46123 (-)
Type: pfam
Location: 44900 - 46123 (-)
Gene ID: HRGMv2_2814_7_46
Type: CAZyme
Location: 46203 - 47369 (-)
Type: CAZyme
Location: 46203 - 47369 (-)
Gene ID: HRGMv2_2814_7_47
Type: CAZyme
Location: 47482 - 48603 (-)
Type: CAZyme
Location: 47482 - 48603 (-)
Gene ID: HRGMv2_2814_7_48
Type: CAZyme
Location: 48617 - 49678 (-)
Type: CAZyme
Location: 48617 - 49678 (-)
Gene ID: HRGMv2_2814_7_49
Type: pfam
Location: 49870 - 51069 (-)
Type: pfam
Location: 49870 - 51069 (-)
Gene ID: HRGMv2_2814_7_50
Type: pfam
Location: 51094 - 52284 (-)
Type: pfam
Location: 51094 - 52284 (-)
Gene ID: HRGMv2_2814_7_51
Type: CAZyme
Location: 52301 - 53386 (-)
Type: CAZyme
Location: 52301 - 53386 (-)
Gene ID: HRGMv2_2814_7_52
Type: pfam
Location: 53386 - 54504 (-)
Type: pfam
Location: 53386 - 54504 (-)
Gene ID: HRGMv2_2814_7_53
Type: pfam
Location: 54536 - 55786 (-)
Type: pfam
Location: 54536 - 55786 (-)
Gene ID: HRGMv2_2814_7_54
Type: TC
Location: 55901 - 56614 (-)
Type: TC
Location: 55901 - 56614 (-)
Gene ID: HRGMv2_2814_7_55
Type: pfam
Location: 56657 - 57406 (-)
Type: pfam
Location: 56657 - 57406 (-)
Gene ID: HRGMv2_2814_7_56
Type: TC
Location: 57399 - 58151 (-)
Type: TC
Location: 57399 - 58151 (-)
Gene ID: HRGMv2_2814_7_57
Type: TC
Location: 58148 - 58855 (-)
Type: TC
Location: 58148 - 58855 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.