Cluster: HRGMv2_2814_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2814
- CGC Family ID: CGCFAM_06175
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2814_5 | HRGMv2_2814_5_57 | 58795 | 59556 | - | 1.A.16.3.3 |
| pfam | HRGMv2_2814_5 | HRGMv2_2814_5_58 | 59816 | 60376 | + | VanZ |
| pfam | HRGMv2_2814_5 | HRGMv2_2814_5_59 | 61022 | 64510 | - | FtsX | FtsX | MacB_PCD |
| TC | HRGMv2_2814_5 | HRGMv2_2814_5_60 | 64544 | 65248 | - | 3.A.1.122.7 |
| CAZyme | HRGMv2_2814_5 | HRGMv2_2814_5_61 | 65946 | 71024 | + | CBM74 | GH13_28 |
| CAZyme | HRGMv2_2814_5 | HRGMv2_2814_5_62 | 71392 | 75528 | + | CBM26 | GH13_42 |
Gene ID: HRGMv2_2814_5_57
Type: TC
Location: 58795 - 59556 (-)
Type: TC
Location: 58795 - 59556 (-)
Gene ID: HRGMv2_2814_5_58
Type: pfam
Location: 59816 - 60376 (+)
Type: pfam
Location: 59816 - 60376 (+)
Gene ID: HRGMv2_2814_5_59
Type: pfam
Location: 61022 - 64510 (-)
Type: pfam
Location: 61022 - 64510 (-)
Gene ID: HRGMv2_2814_5_60
Type: TC
Location: 64544 - 65248 (-)
Type: TC
Location: 64544 - 65248 (-)
Gene ID: HRGMv2_2814_5_61
Type: CAZyme
Location: 65946 - 71024 (+)
Type: CAZyme
Location: 65946 - 71024 (+)
Gene ID: HRGMv2_2814_5_62
Type: CAZyme
Location: 71392 - 75528 (+)
Type: CAZyme
Location: 71392 - 75528 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.