Cluster: HRGMv2_2814_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2814
- CGC Family ID: CGCFAM_00117
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2814_4 | HRGMv2_2814_4_34 | 41736 | 43232 | + | 3.A.1.1.27 |
| TC | HRGMv2_2814_4 | HRGMv2_2814_4_35 | 43229 | 44092 | + | 3.A.1.1.27 |
| CAZyme | HRGMv2_2814_4 | HRGMv2_2814_4_36 | 44167 | 45861 | + | GH13_36 |
| pfam | HRGMv2_2814_4 | HRGMv2_2814_4_37 | 46233 | 47294 | + | TadZ-like_ARD |
| TC | HRGMv2_2814_4 | HRGMv2_2814_4_38 | 47313 | 48551 | + | 3.A.7.15.1 |
Gene ID: HRGMv2_2814_4_34
Type: TC
Location: 41736 - 43232 (+)
Type: TC
Location: 41736 - 43232 (+)
Gene ID: HRGMv2_2814_4_35
Type: TC
Location: 43229 - 44092 (+)
Type: TC
Location: 43229 - 44092 (+)
Gene ID: HRGMv2_2814_4_36
Type: CAZyme
Location: 44167 - 45861 (+)
Type: CAZyme
Location: 44167 - 45861 (+)
Gene ID: HRGMv2_2814_4_37
Type: pfam
Location: 46233 - 47294 (+)
Type: pfam
Location: 46233 - 47294 (+)
Gene ID: HRGMv2_2814_4_38
Type: TC
Location: 47313 - 48551 (+)
Type: TC
Location: 47313 - 48551 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.