Cluster: HRGMv2_2814_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2814
- CGC Family ID: CGCFAM_10022
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2814_1 | HRGMv2_2814_1_81 | 87420 | 89288 | + | 9.B.18.2.1 |
| pfam | HRGMv2_2814_1 | HRGMv2_2814_1_82 | 89327 | 90649 | - | Rieske | FAD_binding_2 | DAO | FAD_binding_3 | NAD_binding_8 |
| CAZyme | HRGMv2_2814_1 | HRGMv2_2814_1_83 | 91729 | 92703 | - | GT2 |
| CAZyme | HRGMv2_2814_1 | HRGMv2_2814_1_84 | 92739 | 93635 | - | GT2 |
| TC | HRGMv2_2814_1 | HRGMv2_2814_1_85 | 93639 | 94754 | - | 4.D.2.1.5 |
Gene ID: HRGMv2_2814_1_81
Type: TC
Location: 87420 - 89288 (+)
Type: TC
Location: 87420 - 89288 (+)
Gene ID: HRGMv2_2814_1_82
Type: pfam
Location: 89327 - 90649 (-)
Type: pfam
Location: 89327 - 90649 (-)
Gene ID: HRGMv2_2814_1_83
Type: CAZyme
Location: 91729 - 92703 (-)
Type: CAZyme
Location: 91729 - 92703 (-)
Gene ID: HRGMv2_2814_1_84
Type: CAZyme
Location: 92739 - 93635 (-)
Type: CAZyme
Location: 92739 - 93635 (-)
Gene ID: HRGMv2_2814_1_85
Type: TC
Location: 93639 - 94754 (-)
Type: TC
Location: 93639 - 94754 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.