Cluster: HRGMv2_2814_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2814
- CGC Family ID: CGCFAM_00328
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2814_25 | HRGMv2_2814_25_34 | 35531 | 36640 | - | 3.A.1.1.26 |
| pfam | HRGMv2_2814_25 | HRGMv2_2814_25_35 | 36878 | 37597 | - | PseudoU_synth_2 | S4 |
| NULL(UNKNOWN) | HRGMv2_2814_25 | HRGMv2_2814_25_36 | 37725 | 38060 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2814_25 | HRGMv2_2814_25_37 | 38333 | 39424 | + | GT2 |
Gene ID: HRGMv2_2814_25_34
Type: TC
Location: 35531 - 36640 (-)
Type: TC
Location: 35531 - 36640 (-)
Gene ID: HRGMv2_2814_25_35
Type: pfam
Location: 36878 - 37597 (-)
Type: pfam
Location: 36878 - 37597 (-)
Gene ID: HRGMv2_2814_25_36
Type:
Location: 37725 - 38060 (+)
Type:
Location: 37725 - 38060 (+)
Gene ID: HRGMv2_2814_25_37
Type: CAZyme
Location: 38333 - 39424 (+)
Type: CAZyme
Location: 38333 - 39424 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.