Cluster: HRGMv2_2814_CGC14
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2814
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2814_18 | HRGMv2_2814_18_1 | 220 | 741 | - | 9.B.156.3.1 |
| TC | HRGMv2_2814_18 | HRGMv2_2814_18_2 | 725 | 1351 | - | 9.B.156.3.1 |
| TF | HRGMv2_2814_18 | HRGMv2_2814_18_3 | 1528 | 1791 | + | SpoVT_AbrB |
| pfam | HRGMv2_2814_18 | HRGMv2_2814_18_4 | 1867 | 3648 | + | MTHFR | S-methyl_trans |
| TC | HRGMv2_2814_18 | HRGMv2_2814_18_5 | 3740 | 5380 | - | 2.A.25.1.3 |
| CAZyme | HRGMv2_2814_18 | HRGMv2_2814_18_6 | 5552 | 9442 | - | CBM26 | GH13_19 |
Gene ID: HRGMv2_2814_18_1
Type: TC
Location: 220 - 741 (-)
Type: TC
Location: 220 - 741 (-)
Gene ID: HRGMv2_2814_18_2
Type: TC
Location: 725 - 1351 (-)
Type: TC
Location: 725 - 1351 (-)
Gene ID: HRGMv2_2814_18_3
Type: TF
Location: 1528 - 1791 (+)
Type: TF
Location: 1528 - 1791 (+)
Gene ID: HRGMv2_2814_18_4
Type: pfam
Location: 1867 - 3648 (+)
Type: pfam
Location: 1867 - 3648 (+)
Gene ID: HRGMv2_2814_18_5
Type: TC
Location: 3740 - 5380 (-)
Type: TC
Location: 3740 - 5380 (-)
Gene ID: HRGMv2_2814_18_6
Type: CAZyme
Location: 5552 - 9442 (-)
Type: CAZyme
Location: 5552 - 9442 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.