Cluster: HRGMv2_2814_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2814
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2814_13 | HRGMv2_2814_13_29 | 36721 | 39492 | - | CBM41 | GH13_14 |
| NULL(UNKNOWN) | HRGMv2_2814_13 | HRGMv2_2814_13_30 | 39856 | 40218 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_2814_13 | HRGMv2_2814_13_31 | 40696 | 41979 | + | Aminotran_1_2 |
| TC | HRGMv2_2814_13 | HRGMv2_2814_13_32 | 42176 | 43618 | + | 2.A.6.4.2 |
| TC | HRGMv2_2814_13 | HRGMv2_2814_13_33 | 43621 | 44625 | + | 2.A.6.4.2 |
Gene ID: HRGMv2_2814_13_29
Type: CAZyme
Location: 36721 - 39492 (-)
Type: CAZyme
Location: 36721 - 39492 (-)
Gene ID: HRGMv2_2814_13_30
Type:
Location: 39856 - 40218 (-)
Type:
Location: 39856 - 40218 (-)
Gene ID: HRGMv2_2814_13_31
Type: STP
Location: 40696 - 41979 (+)
Type: STP
Location: 40696 - 41979 (+)
Gene ID: HRGMv2_2814_13_32
Type: TC
Location: 42176 - 43618 (+)
Type: TC
Location: 42176 - 43618 (+)
Gene ID: HRGMv2_2814_13_33
Type: TC
Location: 43621 - 44625 (+)
Type: TC
Location: 43621 - 44625 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.