Cluster: HRGMv2_2813_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2813
- CGC Family ID: CGCFAM_06175
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2813_11 | HRGMv2_2813_11_56 | 55677 | 56438 | - | 1.A.16.3.2 |
| pfam | HRGMv2_2813_11 | HRGMv2_2813_11_57 | 56696 | 57256 | + | VanZ |
| pfam | HRGMv2_2813_11 | HRGMv2_2813_11_58 | 57905 | 61393 | - | FtsX | FtsX | MacB_PCD |
| TC | HRGMv2_2813_11 | HRGMv2_2813_11_59 | 61427 | 62131 | - | 3.A.1.122.7 |
| CAZyme | HRGMv2_2813_11 | HRGMv2_2813_11_60 | 62834 | 68548 | + | CBM74 | GH13_28 |
| CAZyme | HRGMv2_2813_11 | HRGMv2_2813_11_61 | 68899 | 72084 | + | CBM26 | GH13_42 |
Gene ID: HRGMv2_2813_11_56
Type: TC
Location: 55677 - 56438 (-)
Type: TC
Location: 55677 - 56438 (-)
Gene ID: HRGMv2_2813_11_57
Type: pfam
Location: 56696 - 57256 (+)
Type: pfam
Location: 56696 - 57256 (+)
Gene ID: HRGMv2_2813_11_58
Type: pfam
Location: 57905 - 61393 (-)
Type: pfam
Location: 57905 - 61393 (-)
Gene ID: HRGMv2_2813_11_59
Type: TC
Location: 61427 - 62131 (-)
Type: TC
Location: 61427 - 62131 (-)
Gene ID: HRGMv2_2813_11_60
Type: CAZyme
Location: 62834 - 68548 (+)
Type: CAZyme
Location: 62834 - 68548 (+)
Gene ID: HRGMv2_2813_11_61
Type: CAZyme
Location: 68899 - 72084 (+)
Type: CAZyme
Location: 68899 - 72084 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Pseudoruminococcus
Species
Pseudoruminococcus sp902765855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.