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Cluster: HRGMv2_2813_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2813_16 HRGMv2_2813_16_20 21442 24108 - 3.A.3.2.21
pfam HRGMv2_2813_16 HRGMv2_2813_16_21 24556 25188 + Mntp | Mntp
pfam HRGMv2_2813_16 HRGMv2_2813_16_22 25788 27176 + SBP_bac_8
TC HRGMv2_2813_16 HRGMv2_2813_16_23 27314 28810 + 3.A.1.1.27
TC HRGMv2_2813_16 HRGMv2_2813_16_24 28807 29670 + 3.A.1.1.27
CAZyme HRGMv2_2813_16 HRGMv2_2813_16_25 29746 31443 + GH13_36
pfam HRGMv2_2813_16 HRGMv2_2813_16_26 32001 32768 + PP2C | PP2C_2
TC HRGMv2_2813_16 HRGMv2_2813_16_27 32862 33842 + 1.E.43.3.3
Gene ID: HRGMv2_2813_16_20
Type: TC
Location: 21442 - 24108 (-)
Gene ID: HRGMv2_2813_16_21
Type: pfam
Location: 24556 - 25188 (+)
Gene ID: HRGMv2_2813_16_22
Type: pfam
Location: 25788 - 27176 (+)
Gene ID: HRGMv2_2813_16_23
Type: TC
Location: 27314 - 28810 (+)
Gene ID: HRGMv2_2813_16_24
Type: TC
Location: 28807 - 29670 (+)
Gene ID: HRGMv2_2813_16_25
Type: CAZyme
Location: 29746 - 31443 (+)
Gene ID: HRGMv2_2813_16_26
Type: pfam
Location: 32001 - 32768 (+)
Gene ID: HRGMv2_2813_16_27
Type: TC
Location: 32862 - 33842 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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