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Cluster: HRGMv2_2809_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2809_18 HRGMv2_2809_18_5 3345 4892 + 2.A.35.2.2
pfam HRGMv2_2809_18 HRGMv2_2809_18_6 4911 6053 + MR_MLE_N | MR_MLE_C
TC HRGMv2_2809_18 HRGMv2_2809_18_7 6117 7445 + 2.A.66.1.28
TF HRGMv2_2809_18 HRGMv2_2809_18_8 7468 8853 + HTH_8
CAZyme HRGMv2_2809_18 HRGMv2_2809_18_9 8978 9712 + CE4
pfam HRGMv2_2809_18 HRGMv2_2809_18_10 9774 10016 - SecG
TF HRGMv2_2809_18 HRGMv2_2809_18_11 10230 10871 + LexA_DNA_bind
TC HRGMv2_2809_18 HRGMv2_2809_18_12 11058 12686 - 3.A.1.5.11
pfam HRGMv2_2809_18 HRGMv2_2809_18_13 12683 13495 - Cu-oxidase_4
TC HRGMv2_2809_18 HRGMv2_2809_18_14 13576 16320 - 3.A.5.1.3
pfam HRGMv2_2809_18 HRGMv2_2809_18_15 16520 18124 + Lactamase_B | RMMBL | Beta-Casp | Lactamase_B_2 | Lactamase_B_6
pfam HRGMv2_2809_18 HRGMv2_2809_18_16 18128 19471 + PCMT | Ubie_methyltran | TRAM | Cons_hypoth95 | MTS | tRNA_U5-meth_tr | Methyltransf_11 | Methyltransf_15 | Methyltransf_25 | Methyltransf_31
TC HRGMv2_2809_18 HRGMv2_2809_18_17 19634 21547 + 8.A.59.4.2
Gene ID: HRGMv2_2809_18_5
Type: TC
Location: 3345 - 4892 (+)
Gene ID: HRGMv2_2809_18_6
Type: pfam
Location: 4911 - 6053 (+)
Gene ID: HRGMv2_2809_18_7
Type: TC
Location: 6117 - 7445 (+)
Gene ID: HRGMv2_2809_18_8
Type: TF
Location: 7468 - 8853 (+)
Gene ID: HRGMv2_2809_18_9
Type: CAZyme
Location: 8978 - 9712 (+)
Gene ID: HRGMv2_2809_18_10
Type: pfam
Location: 9774 - 10016 (-)
Gene ID: HRGMv2_2809_18_11
Type: TF
Location: 10230 - 10871 (+)
Gene ID: HRGMv2_2809_18_12
Type: TC
Location: 11058 - 12686 (-)
Gene ID: HRGMv2_2809_18_13
Type: pfam
Location: 12683 - 13495 (-)
Gene ID: HRGMv2_2809_18_14
Type: TC
Location: 13576 - 16320 (-)
Gene ID: HRGMv2_2809_18_15
Type: pfam
Location: 16520 - 18124 (+)
Gene ID: HRGMv2_2809_18_16
Type: pfam
Location: 18128 - 19471 (+)
Gene ID: HRGMv2_2809_18_17
Type: TC
Location: 19634 - 21547 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2809_18_12 vegetarian > omnivore 2.84545 0.01135
HRGMv2_2809_18_17 vegetarian > omnivore 1.03789 0.01135

🧭 Explore Read Mapping of CGC

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