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Cluster: HRGMv2_2809_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2809_16 HRGMv2_2809_16_2 739 1662 + 3.A.1.1.45
TC HRGMv2_2809_16 HRGMv2_2809_16_3 1662 2519 + 3.A.1.1.45
CAZyme HRGMv2_2809_16 HRGMv2_2809_16_4 2596 4107 + GH77
TC HRGMv2_2809_16 HRGMv2_2809_16_5 4236 5618 - 2.A.40.1.4
pfam HRGMv2_2809_16 HRGMv2_2809_16_6 5986 6741 + BPL_C | BPL_LplA_LipB | BPL_LplA_LipB_2
TC HRGMv2_2809_16 HRGMv2_2809_16_7 6751 7293 + 2.A.51.1.6
TC HRGMv2_2809_16 HRGMv2_2809_16_8 7293 7853 + 2.A.51.1.6
Gene ID: HRGMv2_2809_16_2
Type: TC
Location: 739 - 1662 (+)
Gene ID: HRGMv2_2809_16_3
Type: TC
Location: 1662 - 2519 (+)
Gene ID: HRGMv2_2809_16_4
Type: CAZyme
Location: 2596 - 4107 (+)
Gene ID: HRGMv2_2809_16_5
Type: TC
Location: 4236 - 5618 (-)
Gene ID: HRGMv2_2809_16_6
Type: pfam
Location: 5986 - 6741 (+)
Gene ID: HRGMv2_2809_16_7
Type: TC
Location: 6751 - 7293 (+)
Gene ID: HRGMv2_2809_16_8
Type: TC
Location: 7293 - 7853 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2809_16_6 vegetarian > omnivore 2.44617 0.01135

🧭 Explore Read Mapping of CGC

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