Cluster: HRGMv2_2809_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2809
- CGC Family ID: CGCFAM_02260
- Continent: North America
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2809_1 | HRGMv2_2809_1_113 | 123128 | 124966 | - | GH13_39 |
| pfam | HRGMv2_2809_1 | HRGMv2_2809_1_114 | 124978 | 127011 | - | Transpeptidase | PBP_dimer | PBP_dimer |
| NULL(UNKNOWN) | HRGMv2_2809_1 | HRGMv2_2809_1_115 | 127028 | 127537 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2809_1 | HRGMv2_2809_1_116 | 127557 | 128396 | - | 9.B.157.1.2 |
Gene ID: HRGMv2_2809_1_113
Type: CAZyme
Location: 123128 - 124966 (-)
Type: CAZyme
Location: 123128 - 124966 (-)
Gene ID: HRGMv2_2809_1_114
Type: pfam
Location: 124978 - 127011 (-)
Type: pfam
Location: 124978 - 127011 (-)
Gene ID: HRGMv2_2809_1_115
Type:
Location: 127028 - 127537 (-)
Type:
Location: 127028 - 127537 (-)
Gene ID: HRGMv2_2809_1_116
Type: TC
Location: 127557 - 128396 (-)
Type: TC
Location: 127557 - 128396 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Vescimonas
Species
Vescimonas sp900551355
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2809_1_115 | vegetarian > omnivore | 2.16961 | 0.01135 |
| HRGMv2_2809_1_116 | vegetarian > omnivore | 1.70841 | 0.01135 |