Cluster: HRGMv2_2808_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2808
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2808_19 | HRGMv2_2808_19_3 | 7769 | 8572 | - | GT8 |
| TF | HRGMv2_2808_19 | HRGMv2_2808_19_4 | 8823 | 9560 | + | GntR |
| NULL(UNKNOWN) | HRGMv2_2808_19 | HRGMv2_2808_19_5 | 9797 | 10126 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2808_19 | HRGMv2_2808_19_6 | 10074 | 10799 | + | 2.A.56.1.4 |
Gene ID: HRGMv2_2808_19_3
Type: CAZyme
Location: 7769 - 8572 (-)
Type: CAZyme
Location: 7769 - 8572 (-)
Gene ID: HRGMv2_2808_19_4
Type: TF
Location: 8823 - 9560 (+)
Type: TF
Location: 8823 - 9560 (+)
Gene ID: HRGMv2_2808_19_5
Type:
Location: 9797 - 10126 (+)
Type:
Location: 9797 - 10126 (+)
Gene ID: HRGMv2_2808_19_6
Type: TC
Location: 10074 - 10799 (+)
Type: TC
Location: 10074 - 10799 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Vescimonas
Species
Vescimonas sp934591745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2808_19_3 | vegetarian > vegan | 1.31587 | 0.00364 |
| HRGMv2_2808_19_4 | vegetarian > vegan | 2.66002 | 0.00364 |
| HRGMv2_2808_19_5 | vegetarian > vegan | 2.18769 | 0.00364 |
| HRGMv2_2808_19_6 | vegetarian > vegan | 1.84153 | 0.00364 |