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Cluster: HRGMv2_2808_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2808_18 HRGMv2_2808_18_17 15799 16359 - 2.A.51.1.6
TC HRGMv2_2808_18 HRGMv2_2808_18_18 16359 16901 - 2.A.51.1.6
pfam HRGMv2_2808_18 HRGMv2_2808_18_19 16911 17666 - BPL_LplA_LipB
TC HRGMv2_2808_18 HRGMv2_2808_18_20 18034 19371 + 2.A.40.1.4
CAZyme HRGMv2_2808_18 HRGMv2_2808_18_21 19434 20942 - GH77
TC HRGMv2_2808_18 HRGMv2_2808_18_22 21019 21861 - 3.A.1.1.45
TC HRGMv2_2808_18 HRGMv2_2808_18_23 21861 22712 - 3.A.1.1.45
TC HRGMv2_2808_18 HRGMv2_2808_18_24 22877 24187 - 3.A.1.1.45
Gene ID: HRGMv2_2808_18_17
Type: TC
Location: 15799 - 16359 (-)
Gene ID: HRGMv2_2808_18_18
Type: TC
Location: 16359 - 16901 (-)
Gene ID: HRGMv2_2808_18_19
Type: pfam
Location: 16911 - 17666 (-)
Gene ID: HRGMv2_2808_18_20
Type: TC
Location: 18034 - 19371 (+)
Gene ID: HRGMv2_2808_18_21
Type: CAZyme
Location: 19434 - 20942 (-)
Gene ID: HRGMv2_2808_18_22
Type: TC
Location: 21019 - 21861 (-)
Gene ID: HRGMv2_2808_18_23
Type: TC
Location: 21861 - 22712 (-)
Gene ID: HRGMv2_2808_18_24
Type: TC
Location: 22877 - 24187 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2808_18_19 vegetarian > omnivore 3.56725 0.00266

🧭 Explore Read Mapping of CGC

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