Cluster: HRGMv2_2808_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2808
- CGC Family ID: CGCFAM_02260
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2808_17 | HRGMv2_2808_17_1 | 2 | 1783 | - | GH13_39 |
| pfam | HRGMv2_2808_17 | HRGMv2_2808_17_2 | 1795 | 3828 | - | Transpeptidase | PBP_dimer |
| NULL(UNKNOWN) | HRGMv2_2808_17 | HRGMv2_2808_17_3 | 3845 | 4354 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2808_17 | HRGMv2_2808_17_4 | 4374 | 5213 | - | 9.B.157.1.2 |
Gene ID: HRGMv2_2808_17_1
Type: CAZyme
Location: 2 - 1783 (-)
Type: CAZyme
Location: 2 - 1783 (-)
Gene ID: HRGMv2_2808_17_2
Type: pfam
Location: 1795 - 3828 (-)
Type: pfam
Location: 1795 - 3828 (-)
Gene ID: HRGMv2_2808_17_3
Type:
Location: 3845 - 4354 (-)
Type:
Location: 3845 - 4354 (-)
Gene ID: HRGMv2_2808_17_4
Type: TC
Location: 4374 - 5213 (-)
Type: TC
Location: 4374 - 5213 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Vescimonas
Species
Vescimonas sp934591745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2808_17_3 | vegetarian > omnivore | 4.65159 | 0.00266 |
| HRGMv2_2808_17_4 | vegetarian > omnivore | 2.46390 | 0.00266 |