Cluster: HRGMv2_2808_CGC2
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2808
- CGC Family ID: CGCFAM_07524
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2808_3 | HRGMv2_2808_3_17 | 19779 | 20897 | + | GT4 |
| TC | HRGMv2_2808_3 | HRGMv2_2808_3_18 | 20894 | 22294 | + | 9.B.18.1.1 |
| NULL(UNKNOWN) | HRGMv2_2808_3 | HRGMv2_2808_3_19 | 22569 | 22787 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2808_3 | HRGMv2_2808_3_20 | 23033 | 23908 | + | GT111 |
| pfam | HRGMv2_2808_3 | HRGMv2_2808_3_21 | 23901 | 24671 | + | ABC2_membrane |
| TC | HRGMv2_2808_3 | HRGMv2_2808_3_22 | 24682 | 25431 | + | 3.A.1.103.5 |
| pfam | HRGMv2_2808_3 | HRGMv2_2808_3_23 | 25428 | 26561 | + | Amino_oxidase | GLF | NAD_binding_8 |
| CAZyme | HRGMv2_2808_3 | HRGMv2_2808_3_24 | 26578 | 27618 | + | GT2 |
| pfam | HRGMv2_2808_3 | HRGMv2_2808_3_25 | 27623 | 28594 | + | 2-Hacid_dh | 2-Hacid_dh_C |
| CAZyme | HRGMv2_2808_3 | HRGMv2_2808_3_26 | 28611 | 30812 | + | GT56 |
Gene ID: HRGMv2_2808_3_17
Type: CAZyme
Location: 19779 - 20897 (+)
Type: CAZyme
Location: 19779 - 20897 (+)
Gene ID: HRGMv2_2808_3_18
Type: TC
Location: 20894 - 22294 (+)
Type: TC
Location: 20894 - 22294 (+)
Gene ID: HRGMv2_2808_3_19
Type:
Location: 22569 - 22787 (-)
Type:
Location: 22569 - 22787 (-)
Gene ID: HRGMv2_2808_3_20
Type: CAZyme
Location: 23033 - 23908 (+)
Type: CAZyme
Location: 23033 - 23908 (+)
Gene ID: HRGMv2_2808_3_21
Type: pfam
Location: 23901 - 24671 (+)
Type: pfam
Location: 23901 - 24671 (+)
Gene ID: HRGMv2_2808_3_22
Type: TC
Location: 24682 - 25431 (+)
Type: TC
Location: 24682 - 25431 (+)
Gene ID: HRGMv2_2808_3_23
Type: pfam
Location: 25428 - 26561 (+)
Type: pfam
Location: 25428 - 26561 (+)
Gene ID: HRGMv2_2808_3_24
Type: CAZyme
Location: 26578 - 27618 (+)
Type: CAZyme
Location: 26578 - 27618 (+)
Gene ID: HRGMv2_2808_3_25
Type: pfam
Location: 27623 - 28594 (+)
Type: pfam
Location: 27623 - 28594 (+)
Gene ID: HRGMv2_2808_3_26
Type: CAZyme
Location: 28611 - 30812 (+)
Type: CAZyme
Location: 28611 - 30812 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Vescimonas
Species
Vescimonas sp934591745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2808_3_17 | vegetarian > omnivore | 3.78831 | 0.00266 |
| HRGMv2_2808_3_18 | vegetarian > omnivore | 2.71982 | 0.00266 |
| HRGMv2_2808_3_20 | vegetarian > omnivore | 16.79771 | 0.00266 |
| HRGMv2_2808_3_21 | vegetarian > omnivore | 1.70224 | 0.00266 |
| HRGMv2_2808_3_22 | vegetarian > omnivore | 2.15622 | 0.00266 |