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Cluster: HRGMv2_2802_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2802_11 HRGMv2_2802_11_7 6806 7339 + 3.A.1.25.2
peptidase HRGMv2_2802_11 HRGMv2_2802_11_8 7385 8320 + S33.UPW
TF HRGMv2_2802_11 HRGMv2_2802_11_9 8573 8965 + HTH_3
CAZyme HRGMv2_2802_11 HRGMv2_2802_11_10 9162 11543 - GH3
NULL(UNKNOWN) HRGMv2_2802_11 HRGMv2_2802_11_11 11636 12586 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2802_11 HRGMv2_2802_11_12 12597 14228 - 2.A.50.2.1
TC HRGMv2_2802_11 HRGMv2_2802_11_13 14487 15164 + 9.B.143.2.3
pfam HRGMv2_2802_11 HRGMv2_2802_11_14 15151 16389 + MOFRL | DUF4147
TC HRGMv2_2802_11 HRGMv2_2802_11_15 16660 18162 + 4.C.1.1.6
Gene ID: HRGMv2_2802_11_7
Type: TC
Location: 6806 - 7339 (+)
Gene ID: HRGMv2_2802_11_8
Type: peptidase
Location: 7385 - 8320 (+)
Gene ID: HRGMv2_2802_11_9
Type: TF
Location: 8573 - 8965 (+)
Gene ID: HRGMv2_2802_11_10
Type: CAZyme
Location: 9162 - 11543 (-)
Gene ID: HRGMv2_2802_11_11
Type:
Location: 11636 - 12586 (-)
Gene ID: HRGMv2_2802_11_12
Type: TC
Location: 12597 - 14228 (-)
Gene ID: HRGMv2_2802_11_13
Type: TC
Location: 14487 - 15164 (+)
Gene ID: HRGMv2_2802_11_14
Type: pfam
Location: 15151 - 16389 (+)
Gene ID: HRGMv2_2802_11_15
Type: TC
Location: 16660 - 18162 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2802_11_10 vegan > omnivore 1.00014 0.03196
HRGMv2_2802_11_13 vegetarian > vegan 1.03650 0.01285

🧭 Explore Read Mapping of CGC

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