Cluster: HRGMv2_2798_CGC2
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2798
- CGC Family ID: CGCFAM_00004
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2798_6 | HRGMv2_2798_6_40 | 40080 | 41471 | + | 3.A.1.1.45 |
| TC | HRGMv2_2798_6 | HRGMv2_2798_6_41 | 41711 | 42655 | + | 3.A.1.1.45 |
| TC | HRGMv2_2798_6 | HRGMv2_2798_6_42 | 42655 | 43512 | + | 3.A.1.1.45 |
| TF | HRGMv2_2798_6 | HRGMv2_2798_6_43 | 43543 | 44550 | + | LacI |
| CAZyme | HRGMv2_2798_6 | HRGMv2_2798_6_44 | 44561 | 46042 | + | GH77 |
| CAZyme | HRGMv2_2798_6 | HRGMv2_2798_6_45 | 46136 | 48457 | + | GT35 |
| peptidase | HRGMv2_2798_6 | HRGMv2_2798_6_46 | 48518 | 50116 | + | M38.UNW |
| pfam | HRGMv2_2798_6 | HRGMv2_2798_6_47 | 50342 | 51373 | + | Gp_dh_N | Gp_dh_C |
| CAZyme | HRGMv2_2798_6 | HRGMv2_2798_6_48 | 51769 | 53658 | + | CBM48 | GH13_9 |
| pfam | HRGMv2_2798_6 | HRGMv2_2798_6_49 | 53680 | 54864 | + | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_2798_6 | HRGMv2_2798_6_50 | 54883 | 55995 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_2798_6 | HRGMv2_2798_6_51 | 55992 | 57434 | + | GT5 |
| CAZyme | HRGMv2_2798_6 | HRGMv2_2798_6_52 | 57431 | 59833 | + | GT35 |
| CAZyme | HRGMv2_2798_6 | HRGMv2_2798_6_53 | 59841 | 61667 | + | GH13_39 |
Gene ID: HRGMv2_2798_6_40
Type: TC
Location: 40080 - 41471 (+)
Type: TC
Location: 40080 - 41471 (+)
Gene ID: HRGMv2_2798_6_41
Type: TC
Location: 41711 - 42655 (+)
Type: TC
Location: 41711 - 42655 (+)
Gene ID: HRGMv2_2798_6_42
Type: TC
Location: 42655 - 43512 (+)
Type: TC
Location: 42655 - 43512 (+)
Gene ID: HRGMv2_2798_6_43
Type: TF
Location: 43543 - 44550 (+)
Type: TF
Location: 43543 - 44550 (+)
Gene ID: HRGMv2_2798_6_44
Type: CAZyme
Location: 44561 - 46042 (+)
Type: CAZyme
Location: 44561 - 46042 (+)
Gene ID: HRGMv2_2798_6_45
Type: CAZyme
Location: 46136 - 48457 (+)
Type: CAZyme
Location: 46136 - 48457 (+)
Gene ID: HRGMv2_2798_6_46
Type: peptidase
Location: 48518 - 50116 (+)
Type: peptidase
Location: 48518 - 50116 (+)
Gene ID: HRGMv2_2798_6_47
Type: pfam
Location: 50342 - 51373 (+)
Type: pfam
Location: 50342 - 51373 (+)
Gene ID: HRGMv2_2798_6_48
Type: CAZyme
Location: 51769 - 53658 (+)
Type: CAZyme
Location: 51769 - 53658 (+)
Gene ID: HRGMv2_2798_6_49
Type: pfam
Location: 53680 - 54864 (+)
Type: pfam
Location: 53680 - 54864 (+)
Gene ID: HRGMv2_2798_6_50
Type: pfam
Location: 54883 - 55995 (+)
Type: pfam
Location: 54883 - 55995 (+)
Gene ID: HRGMv2_2798_6_51
Type: CAZyme
Location: 55992 - 57434 (+)
Type: CAZyme
Location: 55992 - 57434 (+)
Gene ID: HRGMv2_2798_6_52
Type: CAZyme
Location: 57431 - 59833 (+)
Type: CAZyme
Location: 57431 - 59833 (+)
Gene ID: HRGMv2_2798_6_53
Type: CAZyme
Location: 59841 - 61667 (+)
Type: CAZyme
Location: 59841 - 61667 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-170
Species
CAG-170 sp003516765
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2798_6_40 | vegetarian > vegan | 1.50217 | 0.00016 |
| HRGMv2_2798_6_43 | vegetarian > vegan | 1.27793 | 0.00016 |
| HRGMv2_2798_6_44 | vegetarian > vegan | 1.00909 | 0.00016 |
| HRGMv2_2798_6_46 | vegetarian > vegan | 1.26637 | 0.00016 |
| HRGMv2_2798_6_50 | vegetarian > vegan | 1.20526 | 0.00016 |
| HRGMv2_2798_6_51 | vegetarian > vegan | 1.06585 | 0.00016 |