Cluster: HRGMv2_2779_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2779
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2779_12 | HRGMv2_2779_12_20 | 23273 | 24667 | + | 2.A.66.1.32 |
| NULL(UNKNOWN) | HRGMv2_2779_12 | HRGMv2_2779_12_21 | 24736 | 25101 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2779_12 | HRGMv2_2779_12_22 | 25349 | 28408 | - | GH48 |
| TC | HRGMv2_2779_12 | HRGMv2_2779_12_23 | 29003 | 30055 | + | 3.A.1.132.9 |
| TC | HRGMv2_2779_12 | HRGMv2_2779_12_24 | 30072 | 30800 | + | 3.A.1.132.1 |
Gene ID: HRGMv2_2779_12_20
Type: TC
Location: 23273 - 24667 (+)
Type: TC
Location: 23273 - 24667 (+)
Gene ID: HRGMv2_2779_12_21
Type:
Location: 24736 - 25101 (-)
Type:
Location: 24736 - 25101 (-)
Gene ID: HRGMv2_2779_12_22
Type: CAZyme
Location: 25349 - 28408 (-)
Type: CAZyme
Location: 25349 - 28408 (-)
Gene ID: HRGMv2_2779_12_23
Type: TC
Location: 29003 - 30055 (+)
Type: TC
Location: 29003 - 30055 (+)
Gene ID: HRGMv2_2779_12_24
Type: TC
Location: 30072 - 30800 (+)
Type: TC
Location: 30072 - 30800 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2779_12_20 | vegan > omnivore | 1.64153 | 0.00193 |