Cluster: HRGMv2_2779_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2779
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2779_11 | HRGMv2_2779_11_29 | 32016 | 33455 | + | 9.B.18.1.3 |
| pfam | HRGMv2_2779_11 | HRGMv2_2779_11_30 | 33452 | 34528 | + | NTP_transferase | NTP_transf_3 | ManC_GMP_beta-helix |
| pfam | HRGMv2_2779_11 | HRGMv2_2779_11_31 | 34593 | 35615 | + | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| CAZyme | HRGMv2_2779_11 | HRGMv2_2779_11_32 | 35646 | 36806 | + | GT4 |
| CAZyme | HRGMv2_2779_11 | HRGMv2_2779_11_33 | 36803 | 37924 | + | GT4 |
Gene ID: HRGMv2_2779_11_29
Type: TC
Location: 32016 - 33455 (+)
Type: TC
Location: 32016 - 33455 (+)
Gene ID: HRGMv2_2779_11_30
Type: pfam
Location: 33452 - 34528 (+)
Type: pfam
Location: 33452 - 34528 (+)
Gene ID: HRGMv2_2779_11_31
Type: pfam
Location: 34593 - 35615 (+)
Type: pfam
Location: 34593 - 35615 (+)
Gene ID: HRGMv2_2779_11_32
Type: CAZyme
Location: 35646 - 36806 (+)
Type: CAZyme
Location: 35646 - 36806 (+)
Gene ID: HRGMv2_2779_11_33
Type: CAZyme
Location: 36803 - 37924 (+)
Type: CAZyme
Location: 36803 - 37924 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2779_11_31 | vegan > omnivore | 1.80476 | 0.00193 |
| HRGMv2_2779_11_31 | vegetarian > omnivore | 1.48935 | 0.00834 |