Cluster: HRGMv2_2779_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2779
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2779_2 | HRGMv2_2779_2_18 | 18835 | 19449 | - | 2.A.115.2.14 |
| CAZyme | HRGMv2_2779_2 | HRGMv2_2779_2_19 | 19592 | 21757 | - | CBM79 | CBM79 | GH5_4 |
| pfam | HRGMv2_2779_2 | HRGMv2_2779_2_20 | 21802 | 22290 | - | GtrA_DPMS_TM |
| TC | HRGMv2_2779_2 | HRGMv2_2779_2_21 | 22407 | 23654 | + | 9.A.40.2.4 |
Gene ID: HRGMv2_2779_2_18
Type: TC
Location: 18835 - 19449 (-)
Type: TC
Location: 18835 - 19449 (-)
Gene ID: HRGMv2_2779_2_19
Type: CAZyme
Location: 19592 - 21757 (-)
Type: CAZyme
Location: 19592 - 21757 (-)
Gene ID: HRGMv2_2779_2_20
Type: pfam
Location: 21802 - 22290 (-)
Type: pfam
Location: 21802 - 22290 (-)
Gene ID: HRGMv2_2779_2_21
Type: TC
Location: 22407 - 23654 (+)
Type: TC
Location: 22407 - 23654 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.