Cluster: HRGMv2_2779_CGC23
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2779
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2779_53 | HRGMv2_2779_53_8 | 7746 | 9203 | + | 2.A.86.1.8 |
| TC | HRGMv2_2779_53 | HRGMv2_2779_53_9 | 9287 | 10618 | + | 2.A.79.1.3 |
| pfam | HRGMv2_2779_53 | HRGMv2_2779_53_10 | 11099 | 11599 | - | Flavin_Reduct |
| pfam | HRGMv2_2779_53 | HRGMv2_2779_53_11 | 11949 | 12890 | - | ROK |
| CAZyme | HRGMv2_2779_53 | HRGMv2_2779_53_12 | 12960 | 13751 | - | GH25 |
Gene ID: HRGMv2_2779_53_8
Type: TC
Location: 7746 - 9203 (+)
Type: TC
Location: 7746 - 9203 (+)
Gene ID: HRGMv2_2779_53_9
Type: TC
Location: 9287 - 10618 (+)
Type: TC
Location: 9287 - 10618 (+)
Gene ID: HRGMv2_2779_53_10
Type: pfam
Location: 11099 - 11599 (-)
Type: pfam
Location: 11099 - 11599 (-)
Gene ID: HRGMv2_2779_53_11
Type: pfam
Location: 11949 - 12890 (-)
Type: pfam
Location: 11949 - 12890 (-)
Gene ID: HRGMv2_2779_53_12
Type: CAZyme
Location: 12960 - 13751 (-)
Type: CAZyme
Location: 12960 - 13751 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2779_53_11 | vegan > omnivore | 1.58689 | 0.00193 |
| HRGMv2_2779_53_11 | vegetarian > omnivore | 1.70596 | 0.02497 |