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Cluster: HRGMv2_2779_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2779_49 HRGMv2_2779_49_6 4923 5672 - 1.A.8.13.3
NULL(UNKNOWN) HRGMv2_2779_49 HRGMv2_2779_49_7 5761 5937 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2779_49 HRGMv2_2779_49_8 6104 8023 - GH13_9
STP HRGMv2_2779_49 HRGMv2_2779_49_9 8261 8839 + TetR_N
pfam HRGMv2_2779_49 HRGMv2_2779_49_10 9036 9899 + F_bP_aldolase
TC HRGMv2_2779_49 HRGMv2_2779_49_11 10162 11184 + 3.A.1.121.4
peptidase HRGMv2_2779_49 HRGMv2_2779_49_12 11547 13118 + C26.957
NULL(UNKNOWN) HRGMv2_2779_49 HRGMv2_2779_49_13 13176 15431 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2779_49 HRGMv2_2779_49_14 15443 16408 + GT2
pfam HRGMv2_2779_49 HRGMv2_2779_49_15 16606 17094 + NfeD
TC HRGMv2_2779_49 HRGMv2_2779_49_16 17119 18147 + 8.A.21.2.2
Gene ID: HRGMv2_2779_49_6
Type: TC
Location: 4923 - 5672 (-)
Gene ID: HRGMv2_2779_49_7
Type:
Location: 5761 - 5937 (-)
Gene ID: HRGMv2_2779_49_8
Type: CAZyme
Location: 6104 - 8023 (-)
Gene ID: HRGMv2_2779_49_9
Type: STP
Location: 8261 - 8839 (+)
Gene ID: HRGMv2_2779_49_10
Type: pfam
Location: 9036 - 9899 (+)
Gene ID: HRGMv2_2779_49_11
Type: TC
Location: 10162 - 11184 (+)
Gene ID: HRGMv2_2779_49_12
Type: peptidase
Location: 11547 - 13118 (+)
Gene ID: HRGMv2_2779_49_13
Type:
Location: 13176 - 15431 (+)
Gene ID: HRGMv2_2779_49_14
Type: CAZyme
Location: 15443 - 16408 (+)
Gene ID: HRGMv2_2779_49_15
Type: pfam
Location: 16606 - 17094 (+)
Gene ID: HRGMv2_2779_49_16
Type: TC
Location: 17119 - 18147 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Ruminococcus_C
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2779_49_12 vegan > omnivore 1.13848 0.00193

🧭 Explore Read Mapping of CGC

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